PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462954746
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 283aa    MW: 29858.1 Da    PI: 5.8743
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462954746genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.8e-101664245
                     SSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwq 45
                     g+WT e ++ + +av+ +  +      +W++Ia+ +  g+t+ +++ ++ 
        462954746 16 GAWTREQEKAFENAVATMAEDdeegdaRWEKIAELVE-GKTADEVRRHYE 64
                     79*****************99****************.**********95 PP

2Myb_DNA-binding39.99.6e-13111155347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
        462954746 111 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 155
                      6*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.1321371IPR017884SANT domain
SMARTSM007177.0E-71469IPR001005SANT/Myb domain
PfamPF002496.8E-81664IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-51664IPR009057Homeodomain-like
CDDcd001676.80E-81867No hitNo description
SuperFamilySSF466899.33E-101873IPR009057Homeodomain-like
PROSITE profilePS5129416.605104160IPR017930Myb domain
SuperFamilySSF466891.79E-16106161IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-17108158IPR006447Myb domain, plants
SMARTSM007179.3E-11108158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-11111154IPR009057Homeodomain-like
CDDcd001672.66E-10111156No hitNo description
PfamPF002493.1E-11111155IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAVEEASSSS GEEEAGAWTR EQEKAFENAV ATMAEDDEEG DARWEKIAEL VEGKTADEVR  60
RHYELLVEDV DGIEAGRVPL PTGKKGSGGG GGHGEKGSAK SAEQERRKGI AWTEDEHRLF  120
LLGLEKYGKG DWRSISRNFV ISRTPTQVAS HAQKYFIRLN SMNRERRRSS IHDITSVNNG  180
DASAAQGPIT GTNGQAANPG KSSKQSPQPA NTPPGVDAYG TTIGQPVGGP LVSAVGTPVT  240
LPVPAPPHMA YGVHAPVPGA VVPGAPVNMA PMPYPMPPPS SHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1318961185RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462954746
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794430.0HF679443.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB37 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448771.11e-157transcription factor SRM1
SwissprotQ9FNN61e-100SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0A9DCA71e-161A0A0A9DCA7_ARUDO; Uncharacterized protein
STRINGSb06g032880.11e-157(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.17e-82MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]