PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462953823
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARR-B
Protein Properties Length: 459aa    MW: 49912.1 Da    PI: 6.8308
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462953823genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.11.9e-28156209155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr++W+ eLH++Fv av++L G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  462953823 156 KPRVVWSVELHRKFVAAVNHL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 209
                79*******************.********************************8 PP
2Response_reg50.61.1e-1767343109
                   H..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  43 d..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   +  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++ + +  Ga d+l Kp+ +eel++
     462953823   6 RemFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVMKGITHGACDYLLKPVRIEELRN 73 
                   3349******************87754.558************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001564.63E-18178No hitNo description
PIRSFPIRSF0363922.0E-1501457IPR017053Response regulator B-type, plant
PROSITE profilePS5011031.142179IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.0E-262106No hitNo description
SuperFamilySSF521726.4E-22487IPR011006CheY-like superfamily
PfamPF000728.7E-15774IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129412.616153212IPR017930Myb domain
SuperFamilySSF466897.88E-20154213IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-30154214IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-26156209IPR006447Myb domain, plants
PfamPF002491.7E-6158208IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MLRENREMFD LVISDVHMPD MDGFKLLELV GLEMDLPVIM LSVNGETKTV MKGITHGACD  60
YLLKPVRIEE LRNIWQHVVR RKFGNRDRAN IDTYEECNKP PNADLDHMHS QVTCGSPDQS  120
GRPSKKRKEY HSEEEEEDEG DESNGHDNDD PSAPKKPRVV WSVELHRKFV AAVNHLGIDK  180
AVPKRILELM NVEKLTRENV ASHLQKYRLY LKRLSAVASQ QAGIVAASGG SDAFMRMGAF  240
EGLQGYQTFT PSASLSSFSP QGLLSNTTSF GIHGIAASRS IQIANSNSTI SHSLRGASKY  300
HLNLPGNQQG NLAQGLTTSV GQVQLPQKWI NEETDDLSTI LSTNGLANRA PSTLQSVTNS  360
PLLQQELVEC REANVVIQPS VRTSSGSSEH LGGTVGVSSN LMDSRVSHQS CLPLTAYSAN  420
GLPMNGSCSN NVGKLGAASS GGTHICSSND LTVANGIKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-26152215164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462953823
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954220.10.0two-component response regulator ORR23
SwissprotQ6K8X60.0ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A0A9P9A60.0A0A0A9P9A6_ARUDO; Two-component response regulator
STRINGSi016546m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-83response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]