PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462953821
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARR-B
Protein Properties Length: 507aa    MW: 55294.3 Da    PI: 6.7907
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462953821genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like60.63.2e-19210253145
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                kpr++W+ eLH++Fv av++L G++kA+Pk+ilelm+v+ Lt+e+
  462953821 210 KPRVVWSVELHRKFVAAVNHL-GIDKAVPKRILELMNVEKLTREN 253
                79*******************.********************987 PP
2Response_reg58.92.8e-20231271109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p +++l+  a    ++   +++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++ + +  Ga 
     462953821  23 VLAVDDDPYLQDLC-LA---FKV-TLTTTNQAVIALKMLRENRemFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVMKGITHGAC 113
                   56677777665543.22...345.6789999999*****999999*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel++
     462953821 114 DYLLKPVRIEELRN 127
                   ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.5E-1551505IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23008.7E-3320160No hitNo description
SuperFamilySSF521722.13E-2720141IPR011006CheY-like superfamily
SMARTSM004488.1E-2321129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011029.77722133IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.5E-1723128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.75E-2224132No hitNo description
SuperFamilySSF466897.53E-12208261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-19208261IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-16210253IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MRPEERSSAV GRVRDQFPVG MRVLAVDDDP YLQDLCLAFK VTLTTTNQAV IALKMLRENR  60
EMFDLVISDV HMPDMDGFKL LELVGLEMDL PVIMLSVNGE TKTVMKGITH GACDYLLKPV  120
RIEELRNIWQ HVVRRKFGNR DRANIDTYEE CNKPPNADLD HMHSQVTCGS PDQSGRPSKK  180
RKEYHSEEEE EDEGDESNGH DNDDPSAPKK PRVVWSVELH RKFVAAVNHL GIDKAVPKRI  240
LELMNVEKLT RENKYRLYLK RLSAVASQQA GIVAASGGSD AFMRMGAFEG LQGYQTFTPS  300
ASLSSFSPQG LLSNTTSFGI HGIAASRSIQ IANSNSTISH SLRGASKYHL NLPGNQQGNL  360
AQGLTTSVGQ VQLPQKWINE ETDDLSTILS TNGLANRAPS TLQSVTNSPL LQQELVECRE  420
ANVVIQPSVR TSSGSSEHLG GTVGVSSNLM DSRVSHQSCL PLTAYSANGL PMNGSCSNNV  480
GKLGAASSGG THICSSNDLT VANGIKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-19206263164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462953821
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954220.10.0two-component response regulator ORR23
SwissprotQ6K8X60.0ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A0A9P9A60.0A0A0A9P9A6_ARUDO; Two-component response regulator
STRINGSi016546m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-91response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]