PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462953442
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 113aa    MW: 12330.3 Da    PI: 7.835
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462953442genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.84.6e-163470135
       GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
               C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  462953442 34 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 70
               **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-72981IPR000679Zinc finger, GATA-type
CDDcd002024.66E-143379No hitNo description
SuperFamilySSF577161.57E-113383No hitNo description
PROSITE profilePS501149.4733384IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.2E-153374IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034403461IPR000679Zinc finger, GATA-type
PfamPF003208.5E-143470IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MMPVHLQHVS LQLMARMITS EEPYGLMLTC FGSCQNCGIS SRLTPAMRRG PAGPRSLCNA  60
CGLMWANKGT LRSLNAPKMT LQHHAEMGDA DVKNSSVLPA EHDQATVRSD CEM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462953442
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981867.17e-39GATA transcription factor 19
SwissprotB8AR302e-34GAT19_ORYSI; GATA transcription factor 19
SwissprotQ0DNU12e-34GAT19_ORYSJ; GATA transcription factor 19
TrEMBLK4ACZ05e-37K4ACZ0_SETIT; Uncharacterized protein
STRINGSi036747m9e-38(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-19GATA-type zinc finger protein with TIFY domain