PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462953394 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 79aa MW: 8744.2 Da PI: 8.8458 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.8 | 3.7e-08 | 29 | 54 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ +G+CkyG++C F+H++ 462953394 29 DQPVCTYYDCFGICKYGPSCMFNHPF 54 6899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.53E-6 | 27 | 55 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.338 | 27 | 55 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-5 | 29 | 54 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MKCRYHHQRS RLPAPLTGLS PLGLPIKPDQ PVCTYYDCFG ICKYGPSCMF NHPFNFGPPV 60 PAARSPLHGQ CPTPANFTV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462953394 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807655.1 | 8e-30 | zinc finger CCCH domain-containing protein 65-like isoform X1 | ||||
Swissprot | Q2QTY2 | 9e-26 | C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65 | ||||
TrEMBL | A0A0A9CNH1 | 2e-36 | A0A0A9CNH1_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ha00283.1.p | 3e-31 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7928 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 2e-15 | C3H family protein |
Publications ? help Back to Top | |||
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