PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462953182 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 218aa MW: 24964.4 Da PI: 8.7954 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.9 | 7.4e-11 | 2 | 39 | 11 | 48 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +l++ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl 462953182 2 QLLCTVRLFGDRRWDFIAQVSGLNRTGKSCRLRWVNYL 39 68999*******************************97 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 46 | 90 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr++++E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ 462953182 46 GRMSPQEEHLIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 90 89*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.12 | 1 | 41 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 12.289 | 1 | 39 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.3E-23 | 2 | 86 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-9 | 2 | 39 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.31E-6 | 2 | 39 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-14 | 3 | 46 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.812 | 40 | 94 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-15 | 44 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-16 | 46 | 89 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-24 | 47 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.80E-11 | 47 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MQLLCTVRLF GDRRWDFIAQ VSGLNRTGKS CRLRWVNYLH PGLKHGRMSP QEEHLIIELH 60 ARWGNRWSRI ARRLPGRTDN EIKNYWRTHM RKKAQDRKMS MSPSCSSSSL TYQSFLLDTT 120 PTTGITGDAH NGNSCITSAL ESTQSITDGY PMDQIWKEIE APHAPAMLGI DDPKEKAYGS 180 LPCPPMTTAI WDYKCPELSW KMEDDGIRML SPQFAYGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-20 | 1 | 94 | 13 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 9e-20 | 1 | 94 | 67 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-20 | 1 | 94 | 67 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-20 | 2 | 94 | 14 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-20 | 2 | 94 | 14 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462953182 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980031.1 | 1e-125 | myb-related protein MYBAS1 | ||||
Swissprot | Q53NK6 | 1e-113 | MYBA1_ORYSJ; Myb-related protein MYBAS1 | ||||
TrEMBL | K3ZJP9 | 1e-123 | K3ZJP9_SETIT; Uncharacterized protein | ||||
STRING | Si026803m | 1e-124 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 4e-63 | myb domain protein 59 |
Publications ? help Back to Top | |||
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