PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462952681
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 360aa    MW: 40196.6 Da    PI: 7.2419
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462952681genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.97.1e-52101401128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+   ++ ++ + ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++    
  462952681  10 VPPGFRFHPTDEELLYYYLRKKVSFEPIDL-DVIREIDLNKLEPWDLKDrcRIGTGPQdEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFLGnA 108
                69****************************.9***************943455444445*************************************9767 PP

        NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                g+ +gl+ktLvfy+grap+g+ktdW+mheyrl
  462952681 109 GRRIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 140
                888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-587164IPR003441NAC domain
PROSITE profilePS5100558.66610164IPR003441NAC domain
PfamPF023652.6E-2711140IPR003441NAC domain
Gene3DG3DSA:1.10.3450.106.6E-4315359IPR023203TTHA0068-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MHPSSSPLSV PPGFRFHPTD EELLYYYLRK KVSFEPIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGPQDEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGNAGR RIGLRKTLVF  120
YTGRAPHGKK TDWIMHEYRL DDGDNIEVPP VLEDGWVVCR VFKKKSIQRG FEQQPGMAAA  180
SDDEHQSFHS PVGATQVDQK QGLHYQLMHG GFPAFDPSMH LPQLTSPDAT PATCAPAFMS  240
GTPPFVAMNS PDMGCSSQYM AKLPASAAGG NSGEVLLNSG GERFGAAADW SILDKLLASH  300
QNLDQIFHGK FGGAAVEAPH HFQQQQQQMM MMMEMGASSL QRLPFHYLGC EANDLLKFSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-50816615167NO APICAL MERISTEM PROTEIN
1ut4_B3e-50816615167NO APICAL MERISTEM PROTEIN
1ut7_A3e-50816615167NO APICAL MERISTEM PROTEIN
1ut7_B3e-50816615167NO APICAL MERISTEM PROTEIN
3swm_A4e-50816618170NAC domain-containing protein 19
3swm_B4e-50816618170NAC domain-containing protein 19
3swm_C4e-50816618170NAC domain-containing protein 19
3swm_D4e-50816618170NAC domain-containing protein 19
3swp_A4e-50816618170NAC domain-containing protein 19
3swp_B4e-50816618170NAC domain-containing protein 19
3swp_C4e-50816618170NAC domain-containing protein 19
3swp_D4e-50816618170NAC domain-containing protein 19
4dul_A3e-50816615167NAC domain-containing protein 19
4dul_B3e-50816615167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462952681
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9530451e-136EU953045.1 Zea mays clone 1377565 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827212.10.0NAC domain-containing protein 76-like
SwissprotQ5Z6B61e-106NAC76_ORYSJ; NAC domain-containing protein 76
SwissprotQ9MA171e-105SMB_ARATH; Protein SOMBRERO
TrEMBLA0A1E5VY610.0A0A1E5VY61_9POAL; NAC domain-containing protein 76 (Fragment)
STRINGPavir.Ab01037.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.36e-96NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  3. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  4. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  5. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]