PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462952355
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 593aa    MW: 65529.1 Da    PI: 8.2027
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462952355genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl
        462952355 14 KGPWSPEEDAKLKSYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding29.91.3e-0970148346
                      SS-HHHHHHHHHHHHHTTTT....................................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....................................tWktIartmgkgRtlkqcksrwqk 46 
                       +++eEd +++ +    G++                                    +W+ Ia+ ++ gRt++++k++w++
        462952355  70 GFSEEEDRIILSLYISIGSRykfsrshrpstsfdqtncriscnmlgshmdhaccgrRWSIIAAQLP-GRTDNDIKNYWNT 148
                      589999999999999999999999999999999999999999999999******************.***********97 PP
3Myb_DNA-binding25.23.7e-083453692046
                      TTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  20 GggtWktIartmgkgRtlkqcksrwqk 46 
                      G  +W+ Ia+ ++ gRt++++k++w++
        462952355 345 GR-RWSIIAAQLP-GRTDNDIKNYWNT 369
                      54.5*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.01966IPR017930Myb domain
SMARTSM007176.5E-121364IPR001005SANT/Myb domain
SuperFamilySSF466891.21E-211466IPR009057Homeodomain-like
PfamPF002491.2E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-241569IPR009057Homeodomain-like
CDDcd001671.22E-81662No hitNo description
PROSITE profilePS500908.31663150IPR017877Myb-like domain
SMARTSM007176.5E-967152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-207086IPR009057Homeodomain-like
SuperFamilySSF466891.21E-21122151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-20124154IPR009057Homeodomain-like
PfamPF002492.4E-6124148IPR001005SANT/Myb domain
CDDcd001671.70E-5125150No hitNo description
SMARTSM007170.77309373IPR001005SANT/Myb domain
PROSITE profilePS512947.629341375IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-12342375IPR009057Homeodomain-like
SuperFamilySSF466898.58E-8342376IPR009057Homeodomain-like
PfamPF002494.8E-6345369IPR001005SANT/Myb domain
CDDcd001671.70E-5346371No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDRIIL SLYISIGSRY KFSRSHRPST SFDQTNCRIS CNMLGSHMDH  120
ACCGRRWSII AAQLPGRTDN DIKNYWNTRL KKKLFGKQSR KDQRQQQQFM RQATASDGVK  180
QEASGDANGS SAMAAAAYNW HQQAMALPVQ PMSGTVMEGH RPGDEVDESI RKLLYKLGGS  240
PFAALQQCVP PPMYEGSPSF VQPSCPVDTT PLHEGGVQCS SSLPALELDQ NFHFNQVKLD  300
GLDCFFGMGD QSMKWSEVNT LLACPNNTMA SSSQGMQQYD HACCGRRWSI IAAQLPGRTD  360
NDIKNYWNTR LKKKLFGKQS RKDQRQQQQF MRQATASDGV KQEASGDANG SSAMAAAAYN  420
WHQQAMALPV QPMSGTVMEG HRPGDEVDES IRKLLYKLGG SPFAALQQCV PPTMYEGSPS  480
FVQPSCPVDS APLHEGGVQC SSSLPALELD QNFHFNQVKL DGLDCFFGMG DQSMKWSEVN  540
TLLACPNNTM ASSSQGMQQY GLVDEPSNLG TKSSIEGNIK IGWLLKLLWA ENS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-161415458159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-161415458159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462952355
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1120189e-88AK112018.1 Oryza sativa Japonica Group cDNA clone:006-308-C02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981607.11e-168transcription factor MYB4
TrEMBLK4ACS41e-167K4ACS4_SETIT; Uncharacterized protein
STRINGSi036681m1e-168(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-70myb domain protein 36