PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462952042 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | TALE | ||||||||
Protein Properties | Length: 170aa MW: 19350.6 Da PI: 4.8204 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24 | 6.5e-08 | 121 | 154 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + 462952042 121 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 154 569*****************************87 PP | |||||||
2 | ELK | 28 | 5.1e-10 | 75 | 96 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++L+++Y+++L+++++E++ 462952042 75 ELKNELKQGYKEKLVDIREEIL 96 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03789 | 8.3E-7 | 75 | 96 | IPR005539 | ELK domain |
SMART | SM01188 | 0.0023 | 75 | 96 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.057 | 75 | 95 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.386 | 95 | 158 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.81E-16 | 97 | 161 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.8E-10 | 97 | 162 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.44E-11 | 98 | 159 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-25 | 102 | 159 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.3E-18 | 115 | 154 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 133 | 156 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MEAVMGCWEL EQSLQSLTGA SPGEGTGATM SDDEDNQVDS EANMFDGNDG SDGMGFGPLM 60 LTEGERSLVE RVRQELKNEL KQGYKEKLVD IREEILRKRR AGKLPGDTAS VLKAWWQAHS 120 KWPYPTEDDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP TSSERLDMHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-13 | 98 | 162 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462952042 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068510 | 0.0 | BT068510.1 Zea mays full-length cDNA clone ZM_BFb0231A20 mRNA, complete cds. | |||
GenBank | BT083659 | 0.0 | BT083659.1 Zea mays full-length cDNA clone ZM_BFb0026A02 mRNA, complete cds. | |||
GenBank | HQ858749 | 0.0 | HQ858749.1 Zea mays clone UT1455 ORPHAN transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001169973.1 | 1e-118 | putative knotted-like transcription factor family protein | ||||
Swissprot | Q0E3C3 | 1e-117 | KNOS2_ORYSJ; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | C4IYL2 | 1e-117 | C4IYL2_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G370332_P02 | 1e-117 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-102 | KNOTTED1-like homeobox gene 3 |