PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462952009
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARR-B
Protein Properties Length: 292aa    MW: 32301.8 Da    PI: 7.1923
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462952009genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.67.8e-25206256152
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQ+
  462952009 206 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQR 256
                79*******************.*****************************6 PP
2Response_reg83.28.3e-28271351109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+ek+  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge +++ + +  Ga 
     462952009  27 VLAVDDDPTCLKVLESLLQRCQY-HVTTTGQAATALKLLREKKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMKGITHGAC 121
                   799********************.***************888888*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+  e+l++
     462952009 122 DYLLKPVRLEQLRT 135
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.4E-1473256IPR017053Response regulator B-type, plant
SuperFamilySSF521723.98E-3624145IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.5E-4324160No hitNo description
SMARTSM004481.3E-3225137IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.94826141IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.6E-2527136IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.87E-2728140No hitNo description
SuperFamilySSF466892.51E-16203256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-25204256IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-22206255IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MTVEEVKPLG KANGHGGKDQ FPVGMRVLAV DDDPTCLKVL ESLLQRCQYH VTTTGQAATA  60
LKLLREKKDQ FDLVISDVHM PDMDGFKLLE LVGLEMDLPV IMLSANGETQ TVMKGITHGA  120
CDYLLKPVRL EQLRTIWQHV VRRRSCDAKN HGNENEDGGK KALNAEGENG GANRNKRTSR  180
KGRDEDDGND SDENSNENGD SSTQKKPRVV WSVELHRKFV AAVNQLGIDK AVPKKILDLM  240
NVENITRENV ASHLQRPGKL AMPQDLEILA NAAACKLKCF AISIIACYSY TN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-21202256155ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462952009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0620950.0AB062095.1 Zea mays ZmRR9 mRNA for response regulator 9, complete cds.
GenBankHQ8587450.0HQ858745.1 Zea mays clone UT1443 ARR-B transcription factor mRNA, partial cds.
GenBankHQ8587600.0HQ858760.1 Zea mays clone UT1502 ARR-B transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802594.11e-153two-component response regulator ORR24-like
SwissprotA2X1N21e-152ORR24_ORYSI; Two-component response regulator ORR24
TrEMBLA0A1E5VNB31e-153A0A1E5VNB3_9POAL; Two-component response regulator ORR24 (Fragment)
TrEMBLA0A3L6QJB61e-153A0A3L6QJB6_PANMI; Two-component response regulator
TrEMBLA0A3L6RP701e-152A0A3L6RP70_PANMI; Two-component response regulator
STRINGPavir.Ab00568.1.p1e-154(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-100response regulator 12