PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462951893

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HB-PHD

Protein Properties

Length: 640aa MW: 70392.8 Da PI: 4.3575

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462951893	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.7	3.5e-12	447	494	7	54
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 f++ ++L e+F+ ++yps++ +e LAk+lg+t +qV+ WF rR k 462951893 447 FSPIINQRLYEHFKTEKYPSRDVKESLAKELGITSCQVSRWFETRRRK 494 55666689**************************************98 PP
2	PHD	41.6	2.8e-14	80	135	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ + +++++lCdg C++ fH++Cl+++l +e++p+g wlC+ C++k 462951893 80 FCATCGSkdVTLNNDIILCDGvCDRGFHQNCLSPPLLTEDIPDGdeGWLCPACDCK 135 7****64445****77*****************999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	3.77E-13	71	138	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	5.9E-13	77	134	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	11.119	78	135	IPR019787	Zinc finger, PHD-finger
Pfam	PF00628	1.6E-11	80	135	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	1.00E-25	80	132	No hit	No description
SMART	SM00249	5.1E-11	80	133	IPR001965	Zinc finger, PHD-type
PROSITE pattern	PS01359	0	81	132	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE profile	PS50071	13.653	438	498	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.57E-11	441	495	IPR009057	Homeodomain-like
SMART	SM00389	1.3E-11	441	502	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-9	447	494	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.3E-11	447	505	IPR009057	Homeodomain-like
CDD	cd00086	7.48E-12	447	494	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence Send to blast
LPGAGESGSA FWGFWFLAFL CQLLEKIRPE KELERAKGQI LMYKLRIREV FQNLDSLLSK 60 GKIDESLFDS DGEIACEDIF CATCGSKDVT LNNDIILCDG VCDRGFHQNC LSPPLLTEDI 120 PDGDEGWLCP ACDCKIDCID VINKLQGSDL SIYDSWEKVF PEAAALANGS KQDEAFDLPS 180 DDSEDDDFDP EKAEEHKHVA SKEEGSSEED GDEGSDSDDS NFLTSSDSEP LMDKKKADDL 240 GLPSEDSEDD DYDPAGPDSD KDIQKEKTSS DESDFTSDSD EFCTEIAKSG DHDEVSKPSL 300 PDAEAGDTTC DMEKSTAQAN TANSSLNSME TDMDQSLVLP GSGRRKVERL DYKKLYDETY 360 DKESLDSSDD EEWSGNSTPE KGNEEPSEAE ANPSAVKSSR RTRVASHNDE LTPQTVHPDS 420 LHGSADQKCG GDLTSNGSNS TTRKGQFSPI INQRLYEHFK TEKYPSRDVK ESLAKELGIT 480 SCQVSRWFET RRRKAASKSL SRDNHSAEET NSPAVASTQV KDPEGTVMEK PDVSRIEKEN 540 EGATSGKLNE VCKKTSVLIN RIKRGRRSAA TPPGSKQVHA KNLSSPKGGS GDNHHMDASI 600 RDAIRSNGNP SEDQIPEVDL VDEARKKAIQ RELKKKKMGR

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence Send to blast

LPGAGESGSA FWGFWFLAFL CQLLEKIRPE KELERAKGQI LMYKLRIREV FQNLDSLLSK  60
GKIDESLFDS DGEIACEDIF CATCGSKDVT LNNDIILCDG VCDRGFHQNC LSPPLLTEDI  120
PDGDEGWLCP ACDCKIDCID VINKLQGSDL SIYDSWEKVF PEAAALANGS KQDEAFDLPS  180
DDSEDDDFDP EKAEEHKHVA SKEEGSSEED GDEGSDSDDS NFLTSSDSEP LMDKKKADDL  240
GLPSEDSEDD DYDPAGPDSD KDIQKEKTSS DESDFTSDSD EFCTEIAKSG DHDEVSKPSL  300
PDAEAGDTTC DMEKSTAQAN TANSSLNSME TDMDQSLVLP GSGRRKVERL DYKKLYDETY  360
DKESLDSSDD EEWSGNSTPE KGNEEPSEAE ANPSAVKSSR RTRVASHNDE LTPQTVHPDS  420
LHGSADQKCG GDLTSNGSNS TTRKGQFSPI INQRLYEHFK TEKYPSRDVK ESLAKELGIT  480
SCQVSRWFET RRRKAASKSL SRDNHSAEET NSPAVASTQV KDPEGTVMEK PDVSRIEKEN  540
EGATSGKLNE VCKKTSVLIN RIKRGRRSAA TPPGSKQVHA KNLSSPKGGS GDNHHMDASI  600
RDAIRSNGNP SEDQIPEVDL VDEARKKAIQ RELKKKKMGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	342	349	GRRKVERL

Functional Description ? help Back to Top
Source	Description
UniProt	Interacts with the shrunken (SHR) 26 bp feedback control element.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462951893

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961485.1	0.0	homeobox protein HOX1A isoform X1
Refseq	XP_022681087.1	0.0	homeobox protein HOX1A isoform X2
Swissprot	P46605	0.0	HOX1A_MAIZE; Homeobox protein HOX1A
TrEMBL	A0A0A9GE96	0.0	A0A0A9GE96_ARUDO; Hox1a
STRING	Si021365m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	3e-64	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Publications ? help Back to Top
Bellmann R,Werr W Zmhox1a, the product of a novel maize homeobox gene, interacts with the Shrunken 26 bp feedback control element. EMBO J., 1992. 11(9): p. 3367-74 [PMID:1354614]