PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462951861 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | TCP | ||||||||
Protein Properties | Length: 255aa MW: 27400.6 Da PI: 10.4544 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 91.8 | 1.5e-28 | 48 | 116 | 3 | 71 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssas 71 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+ +a+++i++l+ + ++++ 462951861 48 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDAAQHEIDKLPPLHFPPQD 116 78*************************************************************666652 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.4E-26 | 49 | 109 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.402 | 49 | 107 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MISGGNQRND EVQGAGCRKL QAVTASSRHS SWPASTESRI VRVSRVFGGK DRHSKVRTVK 60 GLRDRRVRLS VPTAIQLYDL QDRLGLSQPS KVVDWLIDAA QHEIDKLPPL HFPPQDHRPP 120 PRGPPAARFG LGHAAIKAAG LMAGLNNNSI NPLAHSLFFA GESNWNNNNN GSTTTTVHDP 180 QTSTLAHHHS PFSSLLSLAP GPQLVFYSPE GGGGFAMKEA ADHQFPVDSI DHSSHGGQLS 240 LSSSARSFLH SGTQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-20 | 54 | 108 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-20 | 54 | 108 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00008 | PBM | Transfer from 496250 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462951861 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956358 | 1e-85 | EU956358.1 Zea mays clone 1561243 TCP family transcription factor containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440063.1 | 1e-95 | transcription factor PCF8 isoform X1 | ||||
Refseq | XP_021304103.1 | 1e-95 | transcription factor PCF8 isoform X1 | ||||
TrEMBL | C5Z0W3 | 3e-94 | C5Z0W3_SORBI; Uncharacterized protein | ||||
STRING | Sb09g025340.1 | 6e-95 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 1e-36 | plastid transcription factor 1 |