PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462951778 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | G2-like | ||||||||
Protein Properties | Length: 408aa MW: 44436.2 Da PI: 4.7244 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.9 | 2.2e-33 | 238 | 292 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHerFv+av+qLGGsekAtPk +l+lmk + Lt++hvkSHLQkYR+ 462951778 238 KARMRWTPELHERFVDAVNQLGGSEKATPKGVLKLMKADNLTIYHVKSHLQKYRT 292 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.241 | 235 | 295 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-31 | 236 | 294 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.15E-17 | 237 | 292 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.5E-25 | 238 | 292 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-10 | 240 | 291 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.0E-21 | 324 | 367 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MERLSTNQIY TSGVPVTVPT SLPSIPVSLD ESFPRLPNAQ TTLMDRELRS TPLSTLQGNV 60 APVRCQFQSS STGSVGPLCS PPAVRFSSVS NTEQYTHANP YNSQAPSSAS SSTLNYGSQY 120 GGFQPSLTEF PGDAGQPWCS DPVDTLLGYS GDVPAGNTAI GVSDDLTKQS EWWTDFMNDD 180 WKDIVDNPAS TENQQVGQPV PSSISVQQSA TQQSVSSQSG EHLAVTAPSP SAGSNTAKAR 240 MRWTPELHER FVDAVNQLGG SEKATPKGVL KLMKADNLTI YHVKSHLQKY RTARYRPELS 300 EGSSEKKVAS KEDIPSIDLK GNFDITEALR LQLELQKRLH EQLEIQRSLQ LRIEEQGKCL 360 QMMLEQHSIP GTDKVMDASD PPESSTVKEV SENCQNGLTK QTESGDSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-30 | 237 | 296 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-30 | 237 | 296 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-30 | 237 | 296 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-30 | 237 | 296 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-30 | 237 | 296 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-30 | 237 | 296 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-30 | 237 | 296 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-30 | 237 | 296 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR1 and PHR3 in regulating Pi starvation response and Pi homeostasis. PHR2 binding to DNA is repressed redundantly by SPX1, SPX2 and SPX4 in a PI-dependent manner. {ECO:0000250|UniProtKB:Q6Z156}. | |||||
UniProt | Transcription factor involved in phosphate starvation signaling (PubMed:18263782, PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:25657119, PubMed:26082401). Functionally redundant with PHR1 and PHR3 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). Involved in both systematic and local Pi-signaling pathways (PubMed:19704822). Regulates several Pi transporters (PubMed:18263782). Regulates the expression of PT2 (PubMed:20149131). Directly up-regulates SPX1 and SPX2 expression, but PHR2 binding to DNA is repressed redundantly by SPX1 and SPX2 in a PI-dependent manner (PubMed:25271318). The DNA-binding activity is also repressed by SPX4 (PubMed:24692424). Involved in root growth under Pi deprivation (PubMed:18263782). {ECO:0000269|PubMed:18263782, ECO:0000269|PubMed:19704822, ECO:0000269|PubMed:20149131, ECO:0000269|PubMed:24692424, ECO:0000269|PubMed:25271318, ECO:0000269|PubMed:25657119, ECO:0000269|PubMed:26082401}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462951778 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by Pi starvation. {ECO:0000269|PubMed:18263782, ECO:0000269|PubMed:26082401}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956084.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 2 isoform X1 | ||||
Swissprot | B8B5N8 | 0.0 | PHR2_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 2 | ||||
Swissprot | Q6Z156 | 0.0 | PHR2_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 2 | ||||
TrEMBL | A0A0A9I4Y2 | 0.0 | A0A0A9I4Y2_ARUDO; Uncharacterized protein | ||||
STRING | Si029945m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1971 | 37 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 1e-68 | phosphate starvation response 1 |