PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462951742

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 599aa MW: 65557.4 Da PI: 8.601

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462951742	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.5	3.8e-11	140	188	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r++ Er+RR r+ +++ eLr+l+P+ +K++Ka+i AveY+++Lq 462951742 140 RAKTTVSERKRRVRMQQKLYELRSLVPNI-----TKMDKASIIADAVEYVRKLQ 188 5667789*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-14	136	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-14	137	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.504	138	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.67E-12	140	192	No hit	No description
Pfam	PF00010	9.5E-9	140	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-12	144	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:1.10.245.10	6.3E-29	373	464	IPR003121	SWIB/MDM2 domain
SuperFamily	SSF47592	8.72E-26	373	463	IPR003121	SWIB/MDM2 domain
SMART	SM00151	1.9E-21	379	458	IPR019835	SWIB domain
Pfam	PF02201	3.8E-23	382	453	IPR003121	SWIB/MDM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence Send to blast
MDQHSLALQH LSPHDHLMVS ACFFNACGSA AHFSFSSGGG AGGLIAAPVS LDQCEWVQNG 60 LMQLGGEVFH GGVSITSVGT AADCQPWRCD GGGSSDGPRP AAAGVSFDGD GDGGEQQGVR 120 DQLATELNRG GNVAGERRDR AKTTVSERKR RVRMQQKLYE LRSLVPNITK MDKASIIADA 180 VEYVRKLQEE IAALPTSTRQ DAQNDVDAGS TSTSDGARRA GGARGRDAGR RGLQFESRVD 240 AALARKKVDI QEALKTPPSL QRTLRIYVFN TFANQGPCAI PPPKNADPPT WSLKIIGRVL 300 EDGAELDPAS VVPKHNPVYP KFSQFFKRVT IALDPSLYPE NPLIIWENAR SAAPQEGFEV 360 KRKGDKEFVA NIRLEMNYTP EKFKLSQPLM EVLGVEVDTR ARVIAALWQY IKAKKLQNPS 420 DPSYFMCDPQ LKKVFGEDKL KFAMLSQKIS QHLGAPPPIN LEHKIKLSGN GAHGSACYDV 480 LVDVPFPLQK EIMAFLANTE KHKDIEACDE VISASIKKIH EHRRRRAFFL GFSQSPVEFI 540 NAMIASQSKD LKLVAGEANR SVEKERRADF YNQPWVEDAV IRYLNRKPAS DGPGGAGGS

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence Send to blast

MDQHSLALQH LSPHDHLMVS ACFFNACGSA AHFSFSSGGG AGGLIAAPVS LDQCEWVQNG  60
LMQLGGEVFH GGVSITSVGT AADCQPWRCD GGGSSDGPRP AAAGVSFDGD GDGGEQQGVR  120
DQLATELNRG GNVAGERRDR AKTTVSERKR RVRMQQKLYE LRSLVPNITK MDKASIIADA  180
VEYVRKLQEE IAALPTSTRQ DAQNDVDAGS TSTSDGARRA GGARGRDAGR RGLQFESRVD  240
AALARKKVDI QEALKTPPSL QRTLRIYVFN TFANQGPCAI PPPKNADPPT WSLKIIGRVL  300
EDGAELDPAS VVPKHNPVYP KFSQFFKRVT IALDPSLYPE NPLIIWENAR SAAPQEGFEV  360
KRKGDKEFVA NIRLEMNYTP EKFKLSQPLM EVLGVEVDTR ARVIAALWQY IKAKKLQNPS  420
DPSYFMCDPQ LKKVFGEDKL KFAMLSQKIS QHLGAPPPIN LEHKIKLSGN GAHGSACYDV  480
LVDVPFPLQK EIMAFLANTE KHKDIEACDE VISASIKKIH EHRRRRAFFL GFSQSPVEFI  540
NAMIASQSKD LKLVAGEANR SVEKERRADF YNQPWVEDAV IRYLNRKPAS DGPGGAGGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1v31_A	4e-32	379	453	8	82	hypothetical protein RAFL11-05-P19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462951742

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020396562.1	0.0	SWI/SNF complex component SNF12 homolog
Swissprot	Q9FMT4	0.0	SNF12_ARATH; SWI/SNF complex component SNF12 homolog
TrEMBL	A0A3L6RUV6	0.0	A0A3L6RUV6_PANMI; Uncharacterized protein
STRING	Sb02g041010.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5949	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28160.1	6e-18	FER-like regulator of iron uptake

Publications ? help Back to Top
Meinke D,Sweeney C,Muralla R Integrating the genetic and physical maps of Arabidopsis thaliana: identification of mapped alleles of cloned essential (EMB) genes. PLoS ONE, 2009. 4(10): p. e7386 [PMID:19812694] Campi M,D'Andrea L,Emiliani J,Casati P Participation of chromatin-remodeling proteins in the repair of ultraviolet-B-damaged DNA. Plant Physiol., 2012. 158(2): p. 981-95 [PMID:22170978] Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148] Jégu T, et al. A SWI/SNF Chromatin Remodelling Protein Controls Cytokinin Production through the Regulation of Chromatin Architecture. PLoS ONE, 2015. 10(10): p. e0138276 [PMID:26457678] Jégu T, et al. The Arabidopsis SWI/SNF protein BAF60 mediates seedling growth control by modulating DNA accessibility. Genome Biol., 2017. 18(1): p. 114 [PMID:28619072]