PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462951545
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 474aa    MW: 50471.1 Da    PI: 9.6288
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462951545genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.82.1e-11121177155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  462951545 121 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 177
                57*******************5444.2455536655.779999**************98 PP
2AP248.22.7e-15220271155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  462951545 220 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 271
                57****************988532...5************************998 PP
3AP248.22.7e-15343394155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  462951545 343 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 394
                57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-9121177IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-14121186IPR016177DNA-binding domain
CDDcd000181.24E-17121187No hitNo description
SMARTSM003801.7E-22122191IPR001471AP2/ERF domain
PROSITE profilePS5103217.504122185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-12122186IPR001471AP2/ERF domain
PRINTSPR003672.4E-6123134IPR001471AP2/ERF domain
PfamPF008475.9E-10220271IPR001471AP2/ERF domain
CDDcd000182.44E-23220281No hitNo description
SuperFamilySSF541714.97E-18220281IPR016177DNA-binding domain
PROSITE profilePS5103219.348221279IPR001471AP2/ERF domain
SMARTSM003802.1E-33221285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-18221279IPR001471AP2/ERF domain
PRINTSPR003672.4E-6261281IPR001471AP2/ERF domain
CDDcd000182.44E-23343404No hitNo description
PfamPF008475.9E-10343394IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-18343404IPR016177DNA-binding domain
SMARTSM003802.1E-33344408IPR001471AP2/ERF domain
PROSITE profilePS5103219.348344402IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-18344402IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MVISRSRREE PRAELAAIAG AAPPPKLEDF LGGGNNNNGG GMVAGAETVA AAAAAEMYDS  60
ELKFIAAGFM SGAAAGAQAA PSPSPVSSVE QADAKLALPA AASAPAPEQR KAVDSFGQRT  120
SIYRGVTRHR WTGRYEAHLW DNSCRREGQS RKGRQGGYDK EEKAARAYDL AALKYWGSST  180
TTNFPVAEYE KELEEMKNMT RQEFVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR  240
VAGNKDLYLG TFSTEEEAAE AYDIAAIKFR GLNAVTNFEI SRYNVESIIS SNLPIGSMSA  300
GGRSTKAVES TPSNSPDAIT GGEAGTARSP PFRKSSGFSR GASIYRGVTR HHQHGRWQAR  360
IGRVAGNKDL YLGTFSTEEE AAEAYDIAAI KFRGLNAVTN FEISRYNVES IISSNLPIGS  420
MSAGGRSTKA VESTPSNSPD AITGGEAGTV PQSLAFSALP VNLALCYSPA SPPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462951545
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0692151e-153BT069215.1 Zea mays full-length cDNA clone ZM_BFb0341N12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960245.11e-164AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-136AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2U1MZ980.0A0A2U1MZ98_ARTAN; AP2/ERF domain-containing protein
STRINGPavir.Gb00275.1.p1e-167(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-118AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]