PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462951506 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 540aa MW: 63329.6 Da PI: 9.0093 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.3 | 1.8e-54 | 6 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeelv++yLk+k++g k+el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++vl+++g+ 462951506 6 LPPGFRFHPTDEELVNYYLKRKIHGLKIEL-DIIPEVDLYKCEPWELAdKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVLHHGGR 104 79****************************.99**************85335566888****************************************** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++g+kktLv+y+grap+g++tdWvmheyrl 462951506 105 AIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 134 ****************************98 PP | |||||||
2 | NAM | 101.2 | 1.4e-31 | 146 | 217 | 57 | 128 |
NAM 57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +wyfF +rd+ky++g r+nrat++gyWk+tgkd++vl+++g+++g+kktLv+y+grap+g++tdWvmheyrl 462951506 146 QWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVLHHGGRAIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 217 8*********************************************************************98 PP | |||||||
3 | NAM | 44.1 | 6.4e-14 | 276 | 316 | 1 | 42 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv 42 lppGfrFhPtdeelv++yLk+kv+g ++el ++i+evd+yk+ 462951506 276 LPPGFRFHPTDEELVNYYLKRKVHGLSIEL-DIIPEVDLYKS 316 79****************************.99*******96 PP | |||||||
4 | NAM | 171.8 | 2.1e-53 | 331 | 458 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeelv++yLk+kv+g ++el ++i+evd+yk+ePw+L k + ++++ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v +++ 462951506 331 LPPGFRFHPTDEELVNYYLKRKVHGLSIEL-DIIPEVDLYKCEPWELAeKsFLPSRDSEWYFFGPRDRKYPNGCRTNRATREGYWKSTGKDRRVNY-QNR 428 79****************************.99**************84335566899*************************************9.889 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g+kktLv+ykgrap+g +t+Wvmheyr+ 462951506 429 SIGMKKTLVYYKGRAPQGLRTSWVMHEYRI 458 9***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-58 | 3 | 141 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.534 | 6 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-29 | 7 | 134 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-15 | 144 | 217 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.8E-38 | 145 | 240 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.407 | 147 | 240 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-14 | 270 | 316 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 9.694 | 276 | 315 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.7E-8 | 277 | 300 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.75E-62 | 324 | 481 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.045 | 331 | 481 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-29 | 332 | 458 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MARVGLPPGF RFHPTDEELV NYYLKRKIHG LKIELDIIPE VDLYKCEPWE LADKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVLH HGGRAIGMKK TLVYYRGRAP 120 QGVRTDWVMH EYRLDDKDAE DTLPIQWYFF GPRDRKYPNG FRTNRATRAG YWKSTGKDRR 180 VLHHGGRAIG MKKTLVYYRG RAPQGVRTDW VMHEYRLDDK DAEDTLPIQD TYALCRVFKK 240 NAICTEVDDL QLQAQQRERS ARKEASCWEL MAPADLPPGF RFHPTDEELV NYYLKRKVHG 300 LSIELDIIPE VDLYKSRKEA SCWELMAPAD LPPGFRFHPT DEELVNYYLK RKVHGLSIEL 360 DIIPEVDLYK CEPWELAEKS FLPSRDSEWY FFGPRDRKYP NGCRTNRATR EGYWKSTGKD 420 RRVNYQNRSI GMKKTLVYYK GRAPQGLRTS WVMHEYRIEE SECDNTMGIQ DSYALCRVFK 480 KTVAFSEFEK QGECSTSEGK GNQEKPTNFG DAGQSSGSNE QGKDNSWMQF IADDLWCNKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-49 | 1 | 481 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-49 | 1 | 481 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-49 | 1 | 481 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-49 | 1 | 481 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-49 | 1 | 481 | 15 | 170 | NAC domain-containing protein 19 |
3swm_B | 2e-49 | 1 | 481 | 15 | 170 | NAC domain-containing protein 19 |
3swm_C | 2e-49 | 1 | 481 | 15 | 170 | NAC domain-containing protein 19 |
3swm_D | 2e-49 | 1 | 481 | 15 | 170 | NAC domain-containing protein 19 |
3swp_A | 2e-49 | 1 | 481 | 15 | 170 | NAC domain-containing protein 19 |
3swp_B | 2e-49 | 1 | 481 | 15 | 170 | NAC domain-containing protein 19 |
3swp_C | 2e-49 | 1 | 481 | 15 | 170 | NAC domain-containing protein 19 |
3swp_D | 2e-49 | 1 | 481 | 15 | 170 | NAC domain-containing protein 19 |
3ulx_A | 2e-49 | 2 | 490 | 11 | 174 | Stress-induced transcription factor NAC1 |
4dul_A | 2e-49 | 1 | 481 | 12 | 167 | NAC domain-containing protein 19 |
4dul_B | 2e-49 | 1 | 481 | 12 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00363 | DAP | Transfer from AT3G17730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462951506 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728059 | 0.0 | KJ728059.1 Zea mays clone pUT6205 NAC transcription factor (NAC121) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803497.1 | 1e-140 | NAC domain-containing protein 45-like | ||||
Swissprot | Q9FFI5 | 2e-81 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | A0A1E5WFF4 | 0.0 | A0A1E5WFF4_9POAL; NAC domain-containing protein 45 | ||||
STRING | OPUNC09G17350.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3713 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 1e-102 | NAC domain containing protein 57 |
Publications ? help Back to Top | |||
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