PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462951411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GATA | ||||||||
Protein Properties | Length: 150aa MW: 16199.7 Da PI: 10.9839 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.5 | 3.2e-17 | 68 | 104 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg + Tp++Rrgpdg++tLCnaCGl+++ kgl 462951411 68 CHHCGISAaaTPMMRRGPDGPRTLCNACGLMWANKGL 104 *****99999***********************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51017 | 9.673 | 36 | 78 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.5E-11 | 36 | 67 | IPR010402 | CCT domain |
SMART | SM00401 | 3.0E-12 | 62 | 120 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.17 | 62 | 121 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.28E-13 | 64 | 126 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.3E-16 | 67 | 109 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.61E-13 | 67 | 110 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 68 | 95 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.3E-15 | 68 | 104 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
VQAVLLLLGG RELNPGLGAS SSSSAPYSKR LNFPHRVASL MRFREKRKER NFDKKIRYTV 60 RKEVALRCHH CGISAAATPM MRRGPDGPRT LCNACGLMWA NKGLLRDLSK SPVPLQAVQS 120 APQNGNAVAA PGVEQENPAA AMANGHELST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462951411 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966123.1 | 7e-80 | GATA transcription factor 20 isoform X1 | ||||
Swissprot | Q5Z4U5 | 1e-76 | GAT20_ORYSJ; GATA transcription factor 20 | ||||
TrEMBL | A0A0A9EJS6 | 9e-79 | A0A0A9EJS6_ARUDO; Uncharacterized protein | ||||
STRING | Si006750m | 3e-79 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4325 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 4e-45 | ZIM-LIKE 2 |