PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462951294

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GRAS

Protein Properties

Length: 630aa MW: 71212.7 Da PI: 5.9504

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462951294	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	295.4	1.5e-90	251	621	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 + lL+ cA+a+++g+++ a +lL++++++as +gd++qRla++f e+L+arla+++s++ k l + s + e l a+kl +s ++k++ + + 462951294 251 RMLLILCAQAIATGNHASACELLKQIRQHASAKGDATQRLAQCFCEGLEARLAGTGSNVNKFLLDRCPS---VREFLEAYKLCMAASGFYKVALVFNIAT 347 679*******************************************************999988888...9*********************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 Il a+eg++r+Hi+ f+ GlQW++Ll +La+R++gpp++RiT ++ p++ +e++eet rL++ +++g+pf+f+ ++ ++e++++e+L+++ + 462951294 348 ILHAMEGKSRLHIVEFGTIFGLQWASLLCQLANREGGPPEVRITSIDCPQPRslPTERIEETVCRLSNTDRKFGLPFKFHS-IVAAWEAVSVEDLNTNAD 446 *********************************************99999***********************.6999********** PP GRAS 200 EalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 E l+Vn ++l +l+des l++ +++ vL+ ++++ P+v++ + +++ ++sFl+rf eal y++alfd+l+a++prese r ++E+ l+gr + nv 462951294 447 ELLVVNDLFNLSTLMDESIFLDNpnPKEMVLNNIQKMCPDVFIQSIVNCSS-GTSFLTRFREALFYFTALFDMLDATIPRESESRLVLEQGLFGRCALNV 545 **************98888668999**********99999998.789***************************************** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +aceg++ r e++++W+ r ++aG++++pl+ ++++ ++ + k++ + + + e++++l+ gW++r L++ S W 462951294 546 IACEGQDLMDRPEKYRQWQVRNKRAGLRQLPLKPNIVQIVRDKVMKFHHKDFLLGEDDQWLIHGWMGRVLFAHSTW 621 ********************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	51.876	224	602	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.1E-88	251	621	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence Send to blast
MAITPEKFFV ESLMEAIPPS PSAFIDLPQS HVDDGEDQLT MDDSLLPHIS RVLMEDEIED 60 NILYSDHPAL LKVQRPFAQI LFSDSFRTNN DTTEPHASVP PPVTDRGNTA VGNNGLLLCN 120 DDHRKLNSDL SKGIDAVDAF LRGVEEASRL LPNNSDFRRG ELVDNVCSES ITHKVLKKRY 180 NRDKHLEDEV GRARKSLMSM KEMEKIRELF DDLMLHSSEA CMRDMKKLRV AMDNEILKHA 240 KKAAMDTVDL RMLLILCAQA IATGNHASAC ELLKQIRQHA SAKGDATQRL AQCFCEGLEA 300 RLAGTGSNVN KFLLDRCPSV REFLEAYKLC MAASGFYKVA LVFNIATILH AMEGKSRLHI 360 VEFGTIFGLQ WASLLCQLAN REGGPPEVRI TSIDCPQPRS LPTERIEETV CRLSNTDRKF 420 GLPFKFHSIV AAWEAVSVED LNTNADELLV VNDLFNLSTL MDESIFLDNP NPKEMVLNNI 480 QKMCPDVFIQ SIVNCSSGTS FLTRFREALF YFTALFDMLD ATIPRESESR LVLEQGLFGR 540 CALNVIACEG QDLMDRPEKY RQWQVRNKRA GLRQLPLKPN IVQIVRDKVM KFHHKDFLLG 600 EDDQWLIHGW MGRVLFAHST WVANDAPFSK

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence Send to blast

MAITPEKFFV ESLMEAIPPS PSAFIDLPQS HVDDGEDQLT MDDSLLPHIS RVLMEDEIED  60
NILYSDHPAL LKVQRPFAQI LFSDSFRTNN DTTEPHASVP PPVTDRGNTA VGNNGLLLCN  120
DDHRKLNSDL SKGIDAVDAF LRGVEEASRL LPNNSDFRRG ELVDNVCSES ITHKVLKKRY  180
NRDKHLEDEV GRARKSLMSM KEMEKIRELF DDLMLHSSEA CMRDMKKLRV AMDNEILKHA  240
KKAAMDTVDL RMLLILCAQA IATGNHASAC ELLKQIRQHA SAKGDATQRL AQCFCEGLEA  300
RLAGTGSNVN KFLLDRCPSV REFLEAYKLC MAASGFYKVA LVFNIATILH AMEGKSRLHI  360
VEFGTIFGLQ WASLLCQLAN REGGPPEVRI TSIDCPQPRS LPTERIEETV CRLSNTDRKF  420
GLPFKFHSIV AAWEAVSVED LNTNADELLV VNDLFNLSTL MDESIFLDNP NPKEMVLNNI  480
QKMCPDVFIQ SIVNCSSGTS FLTRFREALF YFTALFDMLD ATIPRESESR LVLEQGLFGR  540
CALNVIACEG QDLMDRPEKY RQWQVRNKRA GLRQLPLKPN IVQIVRDKVM KFHHKDFLLG  600
EDDQWLIHGW MGRVLFAHST WVANDAPFSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-35	257	622	26	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462951294

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791279.1	0.0	scarecrow-like protein 33
TrEMBL	A0A2T7CRE5	0.0	A0A2T7CRE5_9POAL; Uncharacterized protein
TrEMBL	A0A2T8IAE3	0.0	A0A2T8IAE3_9POAL; Uncharacterized protein
STRING	Pavir.Hb00038.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	1e-119	GRAS family protein