PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462951042 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 378aa MW: 41971.2 Da PI: 5.0073 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 88.5 | 1.2e-27 | 57 | 200 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..........tks 80 lp+G++F+P+d +l+ e+L+ k+ ++ e+i++v+ i++++P++Lp +k++ + ++fF++++k+y g+rk+r ++ 462951042 57 LPAGVKFDPSDLQLL-EHLETKIGLGGsephmfID--EFIATVEndegICYSHPENLP-GMKKDGSVVHFFHTTSKAYGCGQRKRRRvitcsdhtvsDEH 152 799************.99****8766656664433..33433322234**********.677888999******************65888888765447 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 +W+ tgk k+v++ +g ++g kk++v+yk r k+e++ Wvmh+y+l 462951042 153 LRWHMTGKPKPVYD-NGVKKGWKKIMVLYKTlRGGKPERAPWVMHQYHL 200 78************.999***********776888999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-34 | 42 | 219 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.933 | 57 | 219 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-10 | 58 | 200 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MARYWLTNGR GIAKKIRYAA HCANRQISEL GAEAQRECPN CKHYIDNSDV AMQWPGLPAG 60 VKFDPSDLQL LEHLETKIGL GGSEPHMFID EFIATVENDE GICYSHPENL PGMKKDGSVV 120 HFFHTTSKAY GCGQRKRRRV ITCSDHTVSD EHLRWHMTGK PKPVYDNGVK KGWKKIMVLY 180 KTLRGGKPER APWVMHQYHL GEDKDEKDGE LVVSKIFYQS LAKHMENAET EADDEEPDAF 240 AAGIGPKTPK TNTPQPRRAN NSPCETEPNA SILLDQDEEL TIPIAGDDDA GSLVWCAEER 300 EQQAVGEASG AQAVGEPSLL CLEDPASLND VTLLPMNYPI LSQCRNEMLD SNLNAFYGLA 360 DLSNVDLGTP PDLQLSKI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 138 | RKRRR |
2 | 135 | 139 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462951042 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818203.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1 | ||||
Swissprot | Q6NQK2 | 3e-79 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A3L6QEE7 | 0.0 | A0A3L6QEE7_PANMI; NAC domain-containing protein 73-like | ||||
STRING | Pavir.Aa01341.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 3e-80 | NAC domain containing protein 44 |