PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462950571
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 267aa    MW: 29744.5 Da    PI: 9.9831
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462950571genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.85.4e-33471871128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyW 83 
                lp+G++F+Ptd+el+ e+L+ k++ +       +   +    +i+   +i++++P++Lp  v ++    +fF++ +k+y+tg+rk+r+++      + +W
  462950571  47 LPAGVKFDPTDQELL-EHLEGKARPDArklhplV---DefipTIEGEnGICYTHPERLP-GVGKDGLIRHFFHRPSKAYTTGTRKRRKVHtdeqggETRW 141
                799************.99****998885665442...133333665557**********.555555677******************744456555778* PP

        NAM  84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                ++tgk+++v++ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  462950571 142 HKTGKTRPVFA-NGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 187
                ***********.999***********6657999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-3839206IPR003441NAC domain
PROSITE profilePS5100533.20847206IPR003441NAC domain
PfamPF023652.7E-1548187IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVQQLQRRAR RGEQPGHRVN VIRTCPSCGH RAQYEQAAAT IQDLPGLPAG VKFDPTDQEL  60
LEHLEGKARP DARKLHPLVD EFIPTIEGEN GICYTHPERL PGVGKDGLIR HFFHRPSKAY  120
TTGTRKRRKV HTDEQGGETR WHKTGKTRPV FANGKLKGYK KILVLYTNYG KQRKPEKTNW  180
VMHQYHLGSD EEEKDGELVV SKVFYQTQPR QCGGSTTMMA KDAVPLAASA AATDHHQHQH  240
DSNSSMTMKE AAGIPGGANR VQSAGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462950571
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1027940.0AK102794.1 Oryza sativa Japonica Group cDNA clone:J033108B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814632.11e-153NAC domain-containing protein 73-like isoform X2
SwissprotO494591e-119NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2T7DIM31e-153A0A2T7DIM3_9POAL; Uncharacterized protein
STRINGPavir.Eb02718.1.p1e-151(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-121NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]