PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462950571 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 267aa MW: 29744.5 Da PI: 9.9831 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.8 | 5.4e-33 | 47 | 187 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyW 83 lp+G++F+Ptd+el+ e+L+ k++ + + + +i+ +i++++P++Lp v ++ +fF++ +k+y+tg+rk+r+++ + +W 462950571 47 LPAGVKFDPTDQELL-EHLEGKARPDArklhplV---DefipTIEGEnGICYTHPERLP-GVGKDGLIRHFFHRPSKAYTTGTRKRRKVHtdeqggETRW 141 799************.99****998885665442...133333665557**********.555555677******************744456555778* PP NAM 84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++tgk+++v++ +g+l+g kk+Lv+y g+++k+ekt+Wvmh+y+l 462950571 142 HKTGKTRPVFA-NGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 187 ***********.999***********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.63E-38 | 39 | 206 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.208 | 47 | 206 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-15 | 48 | 187 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MVQQLQRRAR RGEQPGHRVN VIRTCPSCGH RAQYEQAAAT IQDLPGLPAG VKFDPTDQEL 60 LEHLEGKARP DARKLHPLVD EFIPTIEGEN GICYTHPERL PGVGKDGLIR HFFHRPSKAY 120 TTGTRKRRKV HTDEQGGETR WHKTGKTRPV FANGKLKGYK KILVLYTNYG KQRKPEKTNW 180 VMHQYHLGSD EEEKDGELVV SKVFYQTQPR QCGGSTTMMA KDAVPLAASA AATDHHQHQH 240 DSNSSMTMKE AAGIPGGANR VQSAGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462950571 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102794 | 0.0 | AK102794.1 Oryza sativa Japonica Group cDNA clone:J033108B03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814632.1 | 1e-153 | NAC domain-containing protein 73-like isoform X2 | ||||
Swissprot | O49459 | 1e-119 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A2T7DIM3 | 1e-153 | A0A2T7DIM3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb02718.1.p | 1e-151 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3075 | 37 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-121 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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