PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462950068 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 164aa MW: 19146 Da PI: 11.0807 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 147.6 | 6.5e-46 | 10 | 130 | 1 | 120 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPtdeel+ +yLkkk+ +k++l evikevd++k+ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + 462950068 10 VPPGFRFHPTDEELLLYYLKKKIGFEKFDL-EVIKEVDLNKIEPWELQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDKCIRT-SY 107 69****************************.99**************963433332566*************************************9.89 PP NAM 98 elvglkktLvfykgrapkgektd 120 +++g++ktLvfy+grap+g+ktd 462950068 108 RKIGMRKTLVFYRGRAPHGQKTD 130 99*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-46 | 5 | 130 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.03 | 10 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-21 | 11 | 125 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KIGFEKFDLE VIKEVDLNKI EPWELQERCR 60 IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR 120 GRAPHGQKTD LDHARVPPRG GRRRAGRHQR KAARLISLHM HVKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-41 | 10 | 130 | 17 | 134 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-41 | 10 | 130 | 17 | 134 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-41 | 10 | 130 | 17 | 134 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-41 | 10 | 130 | 17 | 134 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-41 | 10 | 130 | 20 | 137 | NAC domain-containing protein 19 |
3swm_B | 2e-41 | 10 | 130 | 20 | 137 | NAC domain-containing protein 19 |
3swm_C | 2e-41 | 10 | 130 | 20 | 137 | NAC domain-containing protein 19 |
3swm_D | 2e-41 | 10 | 130 | 20 | 137 | NAC domain-containing protein 19 |
3swp_A | 2e-41 | 10 | 130 | 20 | 137 | NAC domain-containing protein 19 |
3swp_B | 2e-41 | 10 | 130 | 20 | 137 | NAC domain-containing protein 19 |
3swp_C | 2e-41 | 10 | 130 | 20 | 137 | NAC domain-containing protein 19 |
3swp_D | 2e-41 | 10 | 130 | 20 | 137 | NAC domain-containing protein 19 |
4dul_A | 2e-41 | 10 | 130 | 17 | 134 | NAC domain-containing protein 19 |
4dul_B | 2e-41 | 10 | 130 | 17 | 134 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. | |||||
UniProt | Transcription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462950068 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971542 | 0.0 | EU971542.1 Zea mays clone 366845 NAC domain-containing protein 76 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015691469.1 | 3e-93 | PREDICTED: LOW QUALITY PROTEIN: protein BEARSKIN2-like | ||||
Refseq | XP_025824150.1 | 2e-92 | protein BEARSKIN1-like | ||||
Swissprot | Q9C878 | 3e-80 | BRN1_ARATH; Protein BEARSKIN1 | ||||
Swissprot | Q9SV87 | 4e-80 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A0D3FW98 | 3e-92 | A0A0D3FW98_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A2S3I6V2 | 4e-91 | A0A2S3I6V2_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CVD3 | 8e-91 | A0A2T7CVD3_9POAL; Uncharacterized protein | ||||
STRING | Sb06g017720.1 | 2e-91 | (Sorghum bicolor) | ||||
STRING | OBART04G13830.1 | 5e-93 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9297 | 30 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33280.1 | 3e-75 | NAC domain containing protein 15 |
Publications ? help Back to Top | |||
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