PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462950068
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 164aa    MW: 19146 Da    PI: 11.0807
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462950068genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.66.5e-46101301120
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                +ppGfrFhPtdeel+ +yLkkk+  +k++l evikevd++k+ePw+L++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + 
  462950068  10 VPPGFRFHPTDEELLLYYLKKKIGFEKFDL-EVIKEVDLNKIEPWELQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDKCIRT-SY 107
                69****************************.99**************963433332566*************************************9.89 PP

        NAM  98 elvglkktLvfykgrapkgektd 120
                +++g++ktLvfy+grap+g+ktd
  462950068 108 RKIGMRKTLVFYRGRAPHGQKTD 130
                99*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-465130IPR003441NAC domain
PROSITE profilePS5100542.0310161IPR003441NAC domain
PfamPF023651.1E-2111125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KIGFEKFDLE VIKEVDLNKI EPWELQERCR  60
IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR  120
GRAPHGQKTD LDHARVPPRG GRRRAGRHQR KAARLISLHM HVKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-411013017134NO APICAL MERISTEM PROTEIN
1ut4_B2e-411013017134NO APICAL MERISTEM PROTEIN
1ut7_A2e-411013017134NO APICAL MERISTEM PROTEIN
1ut7_B2e-411013017134NO APICAL MERISTEM PROTEIN
3swm_A2e-411013020137NAC domain-containing protein 19
3swm_B2e-411013020137NAC domain-containing protein 19
3swm_C2e-411013020137NAC domain-containing protein 19
3swm_D2e-411013020137NAC domain-containing protein 19
3swp_A2e-411013020137NAC domain-containing protein 19
3swp_B2e-411013020137NAC domain-containing protein 19
3swp_C2e-411013020137NAC domain-containing protein 19
3swp_D2e-411013020137NAC domain-containing protein 19
4dul_A2e-411013017134NAC domain-containing protein 19
4dul_B2e-411013017134NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
UniProtTranscription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462950068
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9715420.0EU971542.1 Zea mays clone 366845 NAC domain-containing protein 76 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691469.13e-93PREDICTED: LOW QUALITY PROTEIN: protein BEARSKIN2-like
RefseqXP_025824150.12e-92protein BEARSKIN1-like
SwissprotQ9C8783e-80BRN1_ARATH; Protein BEARSKIN1
SwissprotQ9SV874e-80BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A0D3FW983e-92A0A0D3FW98_9ORYZ; Uncharacterized protein
TrEMBLA0A2S3I6V24e-91A0A2S3I6V2_9POAL; Uncharacterized protein
TrEMBLA0A2T7CVD38e-91A0A2T7CVD3_9POAL; Uncharacterized protein
STRINGSb06g017720.12e-91(Sorghum bicolor)
STRINGOBART04G13830.15e-93(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92973046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33280.13e-75NAC domain containing protein 15
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]