PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462949451
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 661aa    MW: 73858 Da    PI: 6.3184
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462949451genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.1e-23111211198
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++ +++aee+       ++++   ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +++el+
  462949451 111 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmsQNPPW--QELVAKDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RGDNGELR 206
                99****************************97444444..48************************************************..3489999* PP

                EEEE- CS
         B3  94 vkvfr 98 
                v+v+r
  462949451 207 VGVRR 211
                **997 PP
2Auxin_resp104.71.1e-34237322183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdld...pvrWpnSkWrsLk 83 
                 a+ha+st++ F+++Y+Pr+s+seFvv+v+k+++a ++k+svGmRfkm+fe+++s+err+sGt++gv  ++   ++ W +S WrsLk
   462949451 237 ASHAISTGTLFSIFYKPRTSQSEFVVSVNKYLEAKNRKMSVGMRFKMRFEGDESPERRFSGTIIGVASMStnsTSPWADSDWRSLK 322
                 789************************************************************9997765111678********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-43102240IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-41107226IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-21109211No hitNo description
PfamPF023623.7E-21111211IPR003340B3 DNA binding domain
PROSITE profilePS5086311.462111213IPR003340B3 DNA binding domain
SMARTSM010191.9E-21111213IPR003340B3 DNA binding domain
PfamPF065071.7E-32237322IPR010525Auxin response factor
PfamPF023097.7E-14520623IPR033389AUX/IAA domain
PROSITE profilePS5174524.865532625IPR000270PB1 domain
SuperFamilySSF542778.5E-12534610No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
GPCDALYREL WHACAGPLVT VPRQGELVYY FPQGHMEQLQ ASTDQQLDQH LPLFNLPSKI  60
LCKVVNVELR AETDSDEVYA QIMLQPEADQ NEPISPDVDP PEPERCNVHS FCKTLTASDT  120
STHGGFSVLR RHAEECLPQL DMSQNPPWQE LVAKDLHGNE WHFRHIFRGQ PRRHLLTTGW  180
SVFVSSKRLV AGDAFIFLRG DNGELRVGVR RLMRQLNNMP SSVISSHSMH LGVLATASHA  240
ISTGTLFSIF YKPRTSQSEF VVSVNKYLEA KNRKMSVGMR FKMRFEGDES PERRFSGTII  300
GVASMSTNST SPWADSDWRS LKVQWDEPSA VLRPDRVSPW ELEPLDATSP HPPQPQHHSR  360
NKRARPPASP SIAPDLPPVF GLWKSPAEPT KAFSFSGLQR TQELYPSSPN SIFSSSLNVG  420
FSAKNERSTP TNNHFYWPMQ DTRADSLSAS INKVPFERKQ EPTPAGCRLF GIEISSATSP  480
MATAASVVQD QPAASVDVES DQLSQPSHAN VSDAPAATSE RSPHETESRQ VRSCTKVIMQ  540
GMAVGRAVDL TRVDGYDDLH RKLEEMFDIQ GELSAGLKKW KVVYIDDEDD MMLVGDNPWH  600
EFCSMVKRIY IYSYEEAKQL TPKAKLPVVG DTTKANPNTP APETDMPQSD LKNNVPVADK  660
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.0434917359Auxin response factor 1
4ldw_A0.0434917359Auxin response factor 1
4ldw_B0.0434917359Auxin response factor 1
4ldx_A0.0434917359Auxin response factor 1
4ldx_B0.0434917359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462949451
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453992.10.0auxin response factor 7
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLC5XUU50.0C5XUU5_SORBI; Auxin response factor
STRINGSb04g022830.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]