PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462949195

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 669aa MW: 74385.9 Da PI: 6.3358

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462949195	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.5	5.2e-57	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+ +yLk+k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd++v s +++ 462949195 6 LPPGFRFHPTDEELIIYYLKRKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNS-HKR 103 79**************************.99**********95334455777*********************************9.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kktLv+y+grap+g++tdWvmheyrl 462949195 104 AVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.02E-65	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.583	6	156	IPR003441	NAC domain
Pfam	PF02365	7.6E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS HKRAVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECEH DTGLQDAYAL CRVFKKTAPG PKIIEHYGVV QHHIEQPQWT 180 ASSVDHRSPT LDLSCDVRGD EFESSSFSFP TEAPMDSMHG GFGMQMSAPH EDGKSWMQFL 240 SEDAFNATNP FFMNPTSPSF SCIPSKVDVA LECARLQHRL SLPPLEAEDF PHDVSLDTKT 300 SVLRSNPNEV DILQEFLSVA SASQELINGP SSNYAAEMWP GAGTSSAGTH YSNELSSLVE 360 LGVKAKVEVD NFYHIGCVGT SSGLGLKSGH VDEPVRLVEI AEMEEELIEE KKQVENLRGV 420 RLHNNDLGEI VVEGDESSPT KCITQYPIAD AADNSGEAGH LTDPTDAGGL DTAPIFSQSQ 480 PDDFAIGFDD VNPNASFDLY EKVDVNHGLF ISRVGTAKTF FHRVEPSKKV SFHLNPIASD 540 VSKAIEKFHF PKVSGRVSIF SKFKALIRDK FLLKPSYKRS LGNKESATGS ELLQIVSLLL 600 TPKEVTGPTS EQQLVQKKAK VMKPGWGCDG NNVCLPLSKG SKGISSMFLS GKWAFLTSAL 660 AIRTPGYNH

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS HKRAVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECEH DTGLQDAYAL CRVFKKTAPG PKIIEHYGVV QHHIEQPQWT  180
ASSVDHRSPT LDLSCDVRGD EFESSSFSFP TEAPMDSMHG GFGMQMSAPH EDGKSWMQFL  240
SEDAFNATNP FFMNPTSPSF SCIPSKVDVA LECARLQHRL SLPPLEAEDF PHDVSLDTKT  300
SVLRSNPNEV DILQEFLSVA SASQELINGP SSNYAAEMWP GAGTSSAGTH YSNELSSLVE  360
LGVKAKVEVD NFYHIGCVGT SSGLGLKSGH VDEPVRLVEI AEMEEELIEE KKQVENLRGV  420
RLHNNDLGEI VVEGDESSPT KCITQYPIAD AADNSGEAGH LTDPTDAGGL DTAPIFSQSQ  480
PDDFAIGFDD VNPNASFDLY EKVDVNHGLF ISRVGTAKTF FHRVEPSKKV SFHLNPIASD  540
VSKAIEKFHF PKVSGRVSIF SKFKALIRDK FLLKPSYKRS LGNKESATGS ELLQIVSLLL  600
TPKEVTGPTS EQQLVQKKAK VMKPGWGCDG NNVCLPLSKG SKGISSMFLS GKWAFLTSAL  660
AIRTPGYNH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	8e-56	1	162	15	174	NAC domain-containing protein 19
3swm_B	8e-56	1	162	15	174	NAC domain-containing protein 19
3swm_C	8e-56	1	162	15	174	NAC domain-containing protein 19
3swm_D	8e-56	1	162	15	174	NAC domain-containing protein 19
3swp_A	8e-56	1	162	15	174	NAC domain-containing protein 19
3swp_B	8e-56	1	162	15	174	NAC domain-containing protein 19
3swp_C	8e-56	1	162	15	174	NAC domain-containing protein 19
3swp_D	8e-56	1	162	15	174	NAC domain-containing protein 19
4dul_A	7e-56	1	162	12	171	NAC domain-containing protein 19
4dul_B	7e-56	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462949195

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468623.1	0.0	uncharacterized protein LOC8085734
TrEMBL	K4A6N6	0.0	K4A6N6_SETIT; Uncharacterized protein
STRING	Pavir.Ia04558.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6624	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-124	NAC domain containing protein 28