PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462949007
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family M-type_MADS
Protein Properties Length: 142aa    MW: 16353.6 Da    PI: 8.703
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462949007genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.21.2e-24352251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               rie+   rqv fskRr g++KKA+ELS LCda+va+++fs+ g+ly ++s
  462949007  3 RIEDRVSRQVRFSKRRSGLFKKAYELSELCDAQVALVVFSPAGRLYQFAS 52
               8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554559.16E-26169IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-24153IPR002100Transcription factor, MADS-box
CDDcd002658.32E-32164No hitNo description
PROSITE profilePS5006626.044154IPR002100Transcription factor, MADS-box
PfamPF003191.6E-25350IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-161631IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-163152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MRRIEDRVSR QVRFSKRRSG LFKKAYELSE LCDAQVALVV FSPAGRLYQF ASSNSSVDKI  60
FDRYWDLANT LNDLNIEARD SWIGFNIQKE QSAAGSLYDQ LNNIGQWTLQ PNVKDLSMAE  120
LRCMEEILTD ALTIIKRISR AL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-163681073Myocyte-specific enhancer factor 2B
1tqe_Q8e-163681073Myocyte-specific enhancer factor 2B
1tqe_R8e-163681073Myocyte-specific enhancer factor 2B
1tqe_S8e-163681073Myocyte-specific enhancer factor 2B
6c9l_A8e-163681073Myocyte-specific enhancer factor 2B
6c9l_B8e-163681073Myocyte-specific enhancer factor 2B
6c9l_C8e-163681073Myocyte-specific enhancer factor 2B
6c9l_D8e-163681073Myocyte-specific enhancer factor 2B
6c9l_E8e-163681073Myocyte-specific enhancer factor 2B
6c9l_F8e-163681073Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462949007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429804e-62AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974004.15e-65MADS-box transcription factor 51
RefseqXP_012702155.15e-65MADS-box transcription factor 51
TrEMBLA0A368RP961e-63A0A368RP96_SETIT; Uncharacterized protein
STRINGSi014540m3e-64(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.12e-26MIKC_MADS family protein