PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462948634 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 125aa MW: 14186.8 Da PI: 8.4649 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 58.4 | 2.4e-18 | 24 | 118 | 1 | 84 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknra..........tksgyWk 84 lppGfr+hP d+e++++yL+ k+ ++ +++ vi evd+ ++eP p+ + ++ ++ew fFs++d+ky t +r+nra t+ g Wk 462948634 24 LPPGFRYHPGDDEIISQYLTSKAIDRL-SISGVIGEVDLGNAEPPLGPAssQKSKMREEWSFFSNKDRKYLTRTRTNRAtatasrtrraTRLGCWK 118 79********************87765.66689***********98884222223445*************9999999756666666666677777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-17 | 18 | 118 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.811 | 24 | 125 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-9 | 25 | 119 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MSEVSVDNQV EEEVEDQAAW QLQLPPGFRY HPGDDEIISQ YLTSKAIDRL SISGVIGEVD 60 LGNAEPPLGP ASSQKSKMRE EWSFFSNKDR KYLTRTRTNR ATATASRTRR ATRLGCWKGY 120 QALHR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-14 | 15 | 105 | 6 | 94 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462948634 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147731.1 | 2e-30 | uncharacterized protein LOC100281341 | ||||
Swissprot | Q9LJW3 | 4e-19 | NAC59_ARATH; NAC domain-containing protein 59 | ||||
TrEMBL | A0A287P148 | 6e-30 | A0A287P148_HORVV; NAC transcription factor | ||||
TrEMBL | A0A3L6DHX3 | 9e-30 | A0A3L6DHX3_MAIZE; NAC domain-containing protein 100 | ||||
STRING | GRMZM2G159500_P02 | 7e-30 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 8e-16 | NAC domain containing protein 80 |
Publications ? help Back to Top | |||
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