PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462947625
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARR-B
Protein Properties Length: 664aa    MW: 73102 Da    PI: 7.1947
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462947625genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.11.9e-28208261155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  462947625 208 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 261
                79*******************.********************************8 PP
2Response_reg76.69.2e-26221301109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge + + + +  Ga 
     462947625  22 VLAVDDDPVCLKVLETLLRRCQY-HVTTTNQAITALKLLREHRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKSVMKGITHGAC 116
                   799********************.****************************************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel++
     462947625 117 DYLIKPVRIEELRN 130
                   ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.1E-1901658IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23007.1E-4119151No hitNo description
SuperFamilySSF521723.7E-3519146IPR011006CheY-like superfamily
SMARTSM004487.4E-3020132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.46121136IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.0E-2322131IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.34E-2523135No hitNo description
PROSITE profilePS5129411205264IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-30206266IPR009057Homeodomain-like
SuperFamilySSF466891.24E-19206265IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-25208261IPR006447Myb domain, plants
PfamPF002491.2E-6210260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MEERKEVVMG RERDQFPVGM RVLAVDDDPV CLKVLETLLR RCQYHVTTTN QAITALKLLR  60
EHRDMFDLVI SDVHMPDMDG FKLLELVGLE MDLPVIMLSV NGETKSVMKG ITHGACDYLI  120
KPVRIEELRN IWQHVVRRKF SSRERSNLDI YKEPPSADSC HGQSQIISRL SDQSGRISKK  180
RKELHIEEED DGEENDFQEG DEPSATKKPR VVWSVELHRK FVAAVNQLGI DKAVPKRILE  240
LMNVEKLTRE NVASHLQKYR LYLKRLSAVA SQQASIVAAF GGRDPSFLHM GAFEGLQSYQ  300
HFAPSALPSF DPHGLLSRAG AATFGVHDLA SAKIVQDITN NGILGHCAGD ANKFQLVGLQ  360
ENQANWAQGS TSTAGLPQLQ QKWVHQENNN LSTVFSGSAL INTMSDTLQR VTSTPLPQQE  420
LLECTQAKIT VQPPLRMPSL SSELVERTVG VSGTLQNSSM SQQGALPING GFSTDPFDST  480
SAAKLGTSFV PSQSEIDQTG KFLVGMPVCA SDSLPATNNS KCAASCSGST MLLPPDTRRH  540
SNYLQFGIAS NSRHEMDGMK QDRLHNQGLS SGSFNHNFGA GMTEQANATM SSLIPQMKVH  600
TVTSEDKLKQ KTIYDLGISK LHGGFNSSSC NFDGLLNSII KATWQTASTI FIFSTGFVKC  660
RSIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-24204267164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462947625
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810502.10.0two-component response regulator ORR22-like
SwissprotQ5SML50.0ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A0A9CW650.0A0A0A9CW65_ARUDO; Two-component response regulator
STRINGPavir.J08270.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-108response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]