PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462947566

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

AP2

Protein Properties

Length: 437aa MW: 47067.6 Da PI: 6.1363

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462947566	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49	1.5e-15	102	148	4	55
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g 462947566 102 RGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 148 8***************......55**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	16.608	100	156	IPR001471	AP2/ERF domain
Pfam	PF00847	3.8E-8	102	148	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.3E-15	102	156	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.9E-14	102	157	IPR016177	DNA-binding domain
SMART	SM00380	2.7E-29	102	162	IPR001471	AP2/ERF domain
SMART	SM00380	0.019	203	252	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MVLDLNVESP ADSGTSSSSV LNSGDGGFRF GLLGSPDDED CSGDLAAPAA ASAGFMTRQL 60 FPVPSPLAQP EPEPAAAPVP VWQPRRVEDL VVAQRPGGGA DRGVTFYRRT GRWESHIWDC 120 GKQVYLGGFD TAHAAARAYD RAAIKFRGLE ADINFTLSDY EEDLKQELDQ GRVCAHTPTP 180 EHGFRKGELK IPRRHAARVV AGRRGWGSFL ARSMSILGSL TAKLKLQAYD RAALRFNGRE 240 AVTNFEPSSY NGGDALPDTE NEAIVDGDAV DLDLRISQPN VHDSKRSNPL SGLQLDSPES 300 SSTMASQPMS SSSPWPVYHQ STVVQPHHQR LYPSASPSFF PNYQERPMER RPELGPPSFP 360 NWGWQMQGSP HMPLLNSAAS SGFSTAVGGV PLPSHPPAPF RGPPVLLPPD RVTATVLGTA 420 ADILGVTYWS LPGAVVL

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MVLDLNVESP ADSGTSSSSV LNSGDGGFRF GLLGSPDDED CSGDLAAPAA ASAGFMTRQL  60
FPVPSPLAQP EPEPAAAPVP VWQPRRVEDL VVAQRPGGGA DRGVTFYRRT GRWESHIWDC  120
GKQVYLGGFD TAHAAARAYD RAAIKFRGLE ADINFTLSDY EEDLKQELDQ GRVCAHTPTP  180
EHGFRKGELK IPRRHAARVV AGRRGWGSFL ARSMSILGSL TAKLKLQAYD RAALRFNGRE  240
AVTNFEPSSY NGGDALPDTE NEAIVDGDAV DLDLRISQPN VHDSKRSNPL SGLQLDSPES  300
SSTMASQPMS SSSPWPVYHQ STVVQPHHQR LYPSASPSFF PNYQERPMER RPELGPPSFP  360
NWGWQMQGSP HMPLLNSAAS SGFSTAVGGV PLPSHPPAPF RGPPVLLPPD RVTATVLGTA  420
ADILGVTYWS LPGAVVL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250\|UniProtKB:P47927, ECO:0000269\|PubMed:22003982, ECO:0000269\|PubMed:28066457, ECO:0000305\|PubMed:26631749}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462947566

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269\|PubMed:22003982, ECO:0000305\|PubMed:20017947, ECO:0000305\|PubMed:26631749, ECO:0000305\|PubMed:28066457}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792819.1	1e-168	AP2-like ethylene-responsive transcription factor TOE3 isoform X1
Swissprot	Q84TB5	1e-114	AP22_ORYSJ; APETALA2-like protein 2
TrEMBL	A0A2T7BZ33	1e-167	A0A2T7BZ33_9POAL; Uncharacterized protein
STRING	Pavir.J23520.1.p	1e-163	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2448	38	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-43	related to AP2.7

Publications ? help Back to Top
Lee DY,An G Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice. Plant J., 2012. 69(3): p. 445-61 [PMID:22003982] Wang L, et al. Coordinated regulation of vegetative and reproductive branching in rice. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9 [PMID:26631749] Dai Z,Wang J,Zhu M,Miao X,Shi Z OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice. Front Plant Sci, 2016. 7: p. 1891 [PMID:28066457]