PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462947392 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB_related | ||||||||
Protein Properties | Length: 241aa MW: 26696 Da PI: 7.7584 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 5.9e-17 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E+e++++a k++G W+ I +++g ++t+ q++s+ qk+ 462947392 61 REKWTEDEHEKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 105 789*****************55.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.8E-16 | 55 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.465 | 56 | 110 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 58 | 108 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-16 | 59 | 108 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.9E-14 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 61 | 104 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.24E-12 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MAAMAQVEER DGLDSSDLAI DKRLTLEVAK PPLMDDMMQP KAGMDGYPVK VRKPYTITKQ 60 REKWTEDEHE KFLEALKLYG RSWRQIQEHI GTKTAVQIRS HAQKFFSKVV REPGASNTIE 120 IPPPRPKRKP LHPYPRKCTN SSTVANPATG QPKLAPISSS SGSDQENGSP VSVLSAMQSD 180 AFGSSVSNPS TGCTSPVSSS DDGTNVPGEE NMPHQQTEIH QSVKVIFHHL DHPFYWASLT 240 Y |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator for cold-responsive gene expression and cold tolerance. Part of a regulatory feedback loop that controls a subset of the circadian outputs and modulates the central oscillator. Negatively self-regulates its own expression. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:23371945}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462947392 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by light. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:19805390}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966527.1 | 1e-120 | uncharacterized protein LOC101785788 | ||||
Swissprot | F4K5X6 | 1e-47 | RVE2_ARATH; Protein REVEILLE 2 | ||||
TrEMBL | A0A0A9D841 | 1e-126 | A0A0A9D841_ARUDO; Uncharacterized protein | ||||
STRING | Si006457m | 1e-119 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7783 | 36 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37260.1 | 5e-41 | MYB_related family protein |
Publications ? help Back to Top | |||
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