PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462947062
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 906aa    MW: 101395 Da    PI: 7.3659
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462947062genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.6e-23195296199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++ +++a+e+       +++++  ++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++el+
  462947062 195 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELR 290
                99*****************************7555544..58************************************************..449999** PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+v+r+
  462947062 291 VGVRRA 296
                ***996 PP
2Auxin_resp110.81.3e-36321402183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++tks+F+v+Y+Pr+s+seF+++++++ +++k+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ldp  Wp+S Wr Lk
   462947062 321 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYIESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGCENLDP-LWPESSWRYLK 402
                 89*********************************************************************.9*******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-40187310IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.05E-39188324IPR015300DNA-binding pseudobarrel domain
CDDcd100174.79E-21193295No hitNo description
PfamPF023624.7E-21195296IPR003340B3 DNA binding domain
SMARTSM010191.8E-23195297IPR003340B3 DNA binding domain
PROSITE profilePS5086311.928195297IPR003340B3 DNA binding domain
PfamPF065073.7E-33321402IPR010525Auxin response factor
PfamPF023092.0E-13767867IPR033389AUX/IAA domain
SuperFamilySSF542771.08E-12781859No hitNo description
PROSITE profilePS5174525.11782875IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
DHHQITLPHL LFLPPQKHFS LRFDHSAAAT LRCLPLSASL PLPFLPSRRR LLGFPPAAAA  60
ARTEADAARS HGAAVDARSV PAVDPLYPEL WRACAGPLVT VPRPGDLVFY FPQGHIEQVE  120
ASMNQVAQNQ MRLYDLPSKL LCRVLNVELK AEADTDEVYA QIMLMPEPQQ NEAGGAEKAS  180
SGSNATPPRP AVRSFCKTLT ASDTSTHGGF SVLRRHADEC LPPLDMTQSP PTQELVAKDL  240
HGMEWRFRHI FRGQPRRHLL QSGWSVFVSS KRLVAGDAFI FLRGENGELR VGVRRAMRQL  300
SNVPSSVISS QSMHLGVLAT AWHAINTKSM FTVYYKPRTS PSEFIIPYDQ YIESVKNNYS  360
IGMRFRMRFE GEEAPEQRFT GTIVGCENLD PLWPESSWRY LKVRWDEPST IPRPDRVSPW  420
KIEPASSPPV NPLPLSGGRV KRHRQNAPPT SPESSVLTKE GKFIGHSNFQ DGDENMTRLM  480
LSKPSVSFAV TTKPDVDSAQ TQHQNSVLQG QEQMTLRNNL TDSNDSDATV QKPMMWSPSP  540
NGKSHALTFQ QRPPTDNWMQ LGRRETDFKD SRSASQSFGD SQGLFMQPFD DNQKRLNAFN  600
NQFQDQGSAH RYADPYFFMP PQAALNVESS TRMHAANNEL RFWNNQNGMY GNSSDPQGFR  660
FGQNPSSWLS QPFARVEQPR VVRPHASVAP FDLEKTREGS GFKIFGFKVD AISASPTPMP  720
TTLEDQTHPS LSMNEGQPVQ TECLPEVSVS TAGTATENEK SVQQGPQGSK DIQSKSQGAS  780
ARSCTKVHKQ GVALGRSVDL SKFNDYDELK AELDKMFEFE GELVSANKNW QIVYTDNEGD  840
MMLVGDDPWE EFCSIVRKIY IYTKEEVQKM NSKSTLRKEE PLAVGEGCCV KRTIHEELQL  900
CRVPAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1648442717357Auxin response factor 1
4ldw_A1e-1648442717357Auxin response factor 1
4ldw_B1e-1648442717357Auxin response factor 1
4ldx_A1e-1648442717357Auxin response factor 1
4ldx_B1e-1648442717357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462947062
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971147.10.0auxin response factor 4 isoform X1
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLK3XEM30.0K3XEM3_SETIT; Auxin response factor
STRINGSi000340m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]