PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462947044
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 662aa    MW: 70381.6 Da    PI: 4.8904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462947044genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11237279754
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  462947044 237 MAERRRRKKLNDRLYLLRSVVPKiS------KMDRASILGDAIEYLKEL 279
                79*********************66......****************98 PP
2HLH35.81.5e-11475517754
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  462947044 475 MAERRRRKKLNDRLYLLRSVVPKiS------KMDRASILGDAIEYLKEL 517
                79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16233298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9236279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-14236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15237293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.58E-12237283No hitNo description
PROSITE profilePS5088815.682468517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16471537IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9474517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-14474523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15475531IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.58E-12475521No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MDDSAPPPKT NEIAGGGSGG GDWGYLASDS MSGNSFPAPF QFHRDILSTP TPASMLLSMD  60
SAAFFDLHAA DWGYLASDSM SGNSFPAPFQ FHRDILSTPT PASMLLSMDS AAFFDLHAAG  120
FPSSSSSAAA PSLPAFHDLA ASMPFDDPAQ FLAGPPQQPV VVEPIPKAGF FLQPAPPLSP  180
VSMGWEEDDE LDQNVDASSM AITASMENDT GTAPAGGGGA GGNGRGKKRG MPAKNLMAER  240
RRRKKLNDRL YLLRSVVPKI SKMDRASILG DAIEYLKELL QRVNDLQNEL ESAPNASLVG  300
PTSASFHPST PTLQTFPGCI KEELVPTSFP SPNRQQTTVD VRMREGNAVN IHMFCAPGFP  360
SSSSAAAPAL PAFHDLAASM PFDDPAQFLA GPPQQPVVVE PIPKAAGFFL QPAPPLSPVS  420
MGWEEDDELD QNVDASSMAI TASMENDTGT APAGGGGAGG NGRGKKRGMP AKNLMAERRR  480
RKKLNDRLYL LRSVVPKISK MDRASILGDA IEYLKELLQR VNDLQNEIES APNSSLLGPT  540
SASFHPSTPT LQTFPGCIKE ELVPTSFPSP NRQQTTVDVR MREGNAVNIH MFCARKPGIL  600
LSTLTALENL GLDIEQAVIS CFGGFAMDIF RAEQRCVDGP GPVPEDIKAV LAHSAGLQNA  660
LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14229527363Transcription factor MYC2
5gnj_B1e-14229527363Transcription factor MYC2
5gnj_E1e-14229527363Transcription factor MYC2
5gnj_F1e-14229527363Transcription factor MYC2
5gnj_G1e-14229527363Transcription factor MYC2
5gnj_I1e-14229527363Transcription factor MYC2
5gnj_M1e-14229527363Transcription factor MYC2
5gnj_N1e-14229527363Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1464482KKRGMPAKNLMAERRRRKK
2476483ERRRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462947044
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971151.11e-130transcription factor ICE1
TrEMBLA0A0A9EZL11e-132A0A0A9EZL1_ARUDO; Uncharacterized protein
STRINGSi001874m1e-129(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.48e-87bHLH family protein