PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462946865
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family FAR1
Protein Properties Length: 731aa    MW: 83402.1 Da    PI: 8.6819
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462946865genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.64.2e-1464100135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C  Cg +   Tp++Rrgpdg++tLCnaCG+ yrk ++
  462946865  64 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKGKM 100
                5667777777************************876 PP
2FAR182.38e-26134221191
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                +fYn+YA +vGFsvrks+s+ks++n  ++ rtfvCs+eg+++++k+   +++++r  tr+gC a+l +k + + k++vt+++ +HnH+lap
  462946865 134 EFYNKYAGHVGFSVRKSTSHKSSENI-TKVRTFVCSREGYNRDKKSL--EAKKPRLDTRIGCPARLIIKVTPECKYRVTDFKGDHNHQLAP 221
                6*********************6666.899*************9988..99*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.1E-656113IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-1062111No hitNo description
Gene3DG3DSA:3.30.50.107.1E-1163102IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.3E-116499IPR000679Zinc finger, GATA-type
CDDcd002022.64E-774101No hitNo description
PfamPF031013.3E-23134221IPR004330FAR1 DNA binding domain
PfamPF105511.7E-26344438IPR018289MULE transposase domain
PROSITE profilePS509669.644612659IPR007527Zinc finger, SWIM-type
PfamPF044346.1E-6620656IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-5634661IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MGEEGSCSHS PRRRWSRSWS STATTPMMAS KAMCGTCARP RASPSLCLQQ ATRFLSPLVR  60
WGRCLRCGIS GNATPHMRRG PDGPRTLCNA CGIAYRKGKM RRMIEAEPPI DEAALAKLVP  120
EVGMEFESEE KAYEFYNKYA GHVGFSVRKS TSHKSSENIT KVRTFVCSRE GYNRDKKSLE  180
AKKPRLDTRI GCPARLIIKV TPECKYRVTD FKGDHNHQLA PPSTMHMLRS QRILTELQSG  240
DAELSDDSVV TPTTKATGDL VVRQVGFLRS ISQLPADYKN YLRSKRMKAM QVGDGGAILK  300
YLQTMQMENP SFFYTMQIDE DDKLTNFFWA DPKSRDDFNY FSDVLSLDTT YKINGYGRPL  360
ALFLGVNHHK QTIIFGAALL YDESYESYKW LFESFKIAMH GKQPAVALID QSIPLSSAMA  420
AAWPNTTQRI CAWHVYQNSL KHLNHVFQGS KTFAKDFSKC VFGFEDADEF LYAWRSMLEK  480
YDLRHNEWLS KVFDERERWA LPYDRHIFCA DIISALQAES FSSVLKKFLS PQLDLLSFFK  540
HYERTVDEHR YAELQADFQA SQSYPRIPPA KMLKQTAHTY TPVVFEIFRK EFELFMDCVL  600
FSCGEVGTTS EYKVAPSEKP KEHFVRFDSS DCSCVCTCRK FEFMGIPCCH MLKVLDFSNI  660
KELPQKYLLK RWRRTAKSAD EDTQGNAANS TGSSLNTPVP SANHNGFQSF SAMIQDASVS  720
SMHENSFHRS S
Cis-element ? help Back to Top
SourceLink
PlantRegMap462946865
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958302.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A368Q7Y10.0A0A368Q7Y1_SETIT; Uncharacterized protein
STRINGORGLA07G0170400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-120FAR1-related sequence 5