PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462946424 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 322aa MW: 36301.3 Da PI: 7.7089 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.8 | 9.4e-49 | 27 | 158 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 pGfrFhPtd+el+ +yLk++ve++ +++ e+ike+diyk++PwdLp+ a+ek+wyfF+ r +ky+++ r+nr+t sg+Wkatg dk++++ 462946424 27 FPGFRFHPTDQELIGFYLKRRVENRGFSI-EIIKEIDIYKHDPWDLPSearhvVQGAGEKDWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDKPIHDGa 125 69***************************.89**************95366543334888*************************************987 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ge +glkk+Lv+y+g+a +g+ktdW+mhe+rl 462946424 126 GGECIGLKKSLVYYRGSAGRGTKTDWMMHEFRL 158 8889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-54 | 26 | 182 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.021 | 26 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-24 | 28 | 158 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEDKKPLVRT KESSGTGGGN EEDDLVFPGF RFHPTDQELI GFYLKRRVEN RGFSIEIIKE 60 IDIYKHDPWD LPSEARHVVQ GAGEKDWYFF CLRGRKYRNS IRPNRVTGSG FWKATGIDKP 120 IHDGAGGECI GLKKSLVYYR GSAGRGTKTD WMMHEFRLPS TSSAAADVQD AEIWTICRIF 180 KRNMSCNRRY QQQKQEHRGN NKRSPQQQQL DYYYGYGYQH HQHHHYTGGG ASMASSFEST 240 TTDTSEAHAT DHDQPFLLHG FLGASPVDVT AAATKTSATI GSSQLLSSSG WSELTSFSRD 300 GGSSWDELGR ILEISTHVPY CL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-50 | 28 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-50 | 28 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-50 | 28 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-50 | 28 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-50 | 28 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-50 | 28 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-50 | 28 | 188 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-50 | 28 | 188 | 22 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462946424 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003829 | 3e-49 | AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01. | |||
GenBank | AP004314 | 3e-49 | AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05. | |||
GenBank | AP014963 | 3e-49 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 3e-49 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809001.1 | 1e-136 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 2e-82 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A1E5WKN5 | 1e-151 | A0A1E5WKN5_9POAL; Transcription factor JUNGBRUNNEN 1 | ||||
STRING | Pavir.Ca02638.1.p | 1e-143 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-84 | NAC domain containing protein 42 |