PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462946170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 247aa MW: 26626.6 Da PI: 9.6428 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 38 | 83 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+++ gR++k+c++rw++ 462946170 38 RGHWRPAEDAKLKELVAQHGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 83 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.8 | 5.2e-18 | 90 | 134 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +++ eE+e+l+ a++ +G++ W++I+r ++ gRt++++k++w+ + 462946170 90 RRAFSDEEEERLLAAHRAYGNK-WALISRLFP-GRTDNSVKNHWHVL 134 6789******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.525 | 33 | 84 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-14 | 37 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 38 | 83 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.69E-28 | 38 | 135 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-27 | 39 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.84E-14 | 41 | 82 | No hit | No description |
PROSITE profile | PS51294 | 26.481 | 85 | 139 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-15 | 89 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-15 | 90 | 134 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-20 | 92 | 137 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.16E-12 | 92 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence Send to blast |
MAHDMAGVFG PTPPERHVVE QGGHGYGGSG GQGKLCARGH WRPAEDAKLK ELVAQHGPQN 60 WNLIAEKLDG RSGKSCRLRW FNQLDPRINR RAFSDEEEER LLAAHRAYGN KWALISRLFP 120 GRTDNSVKNH WHVLMARRQR EQSGALRRRK TSSSSTPPGA APHFASPVVH HLPYYGSTAP 180 PFHGGGGGVP LDAAATDASR AYSGGGDSDE SASTCTTDLS LGSAGAPVPC FYQRQSTYGP 240 SSLHAVL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 36 | 138 | 5 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462946170 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU967775 | 1e-142 | EU967775.1 Zea mays clone 305974 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187176.1 | 1e-100 | transcriptional activator Myb-like | ||||
Swissprot | Q5NBM8 | 4e-84 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A446PNW9 | 1e-100 | A0A446PNW9_TRITD; Uncharacterized protein | ||||
STRING | Pavir.J31094.1.p | 1e-98 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-66 | myb domain protein 105 |