PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462946009
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 412aa    MW: 46828.6 Da    PI: 5.491
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462946009genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567.5e-18990290
               EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
         B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
               fk +     +++g +++p kf+e+++gk   +k+  l+ +sg++W v    +k  ++ +l++GW++Fvka++L+e+D ++F+ +++s+f
  462946009  9 FKLM--TGDFAKG-ISIPEKFVENFNGK--ITKEFNLKVPSGETWHVGA--EKDADELFLKSGWEDFVKAHELQENDLLIFTCSSNSSF 90
               5555..4445555.9*******999888..6679***************..*******************************9888877 PP
2B3573.5e-18921681799
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ++p kf+e+++gk   +k+  l+ +sg++W v    +k  ++ +l++GW++Fvka++L+e+D ++F+ +++s+f   v +f++
  462946009  92 SIPEKFVENFNGK--ITKEFNLKVPSGETWHVGA--EKDADELFLKSGWEDFVKAHELQENDLLIFTCSSNSSF--EVLIFDA 168
                8******999888..6679***************..*******************************9988999..8988886 PP
3B342.31.4e-13309407199
                EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
         B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                ff+vl  s+v ++ + l++p +f+++h ++  +  ++tl+ ++   +W vk+   ++s+++    + ++F  +n+L+egD++ F+l++  ++ +++v+v+
  462946009 309 FFTVLQMSHVRRKnNFLIFPSRFVADHLES--SLHEITLRRPNRkDKWCVKYYCARTSRGI-RNYNFSKFMIDNKLREGDICAFELMKGaRRVTMTVHVI 405
                6777777777766367799********544..44589**9955549******556676665.5669*******************99877999*****99 PP

                -S CS
         B3  98 rk 99 
                r+
  462946009 406 RN 407
                86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.586575IPR003340B3 DNA binding domain
SuperFamilySSF1019369.61E-18690IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-16783No hitNo description
Gene3DG3DSA:2.40.330.101.4E-18790IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-7891IPR003340B3 DNA binding domain
PfamPF023624.5E-15890IPR003340B3 DNA binding domain
PROSITE profilePS5086314.15676169IPR003340B3 DNA binding domain
CDDcd100174.79E-1781167No hitNo description
SuperFamilySSF1019361.88E-1991171IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-2092171IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.9E-492169IPR003340B3 DNA binding domain
PfamPF023623.2E-1592168IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-16301406IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-16302406IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-13307406No hitNo description
SMARTSM010191.6E-6309408IPR003340B3 DNA binding domain
PfamPF023623.6E-12309407IPR003340B3 DNA binding domain
PROSITE profilePS508639.841310408IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MAATRIRFFK LMTGDFAKGI SIPEKFVENF NGKITKEFNL KVPSGETWHV GAEKDADELF  60
LKSGWEDFVK AHELQENDLL IFTCSSNSSF ESIPEKFVEN FNGKITKEFN LKVPSGETWH  120
VGAEKDADEL FLKSGWEDFV KAHELQENDL LIFTCSSNSS FEVLIFDASG CEKVSYLFAD  180
KTGPNMCINS DDEVNQGQLD GHNSLSDSED TTTPSQLVGS TRGATTSQKH TLVTSSLNEI  240
VPCKKPRMLL QSPNSSDDHV KHEAIGEGDS DEQNSNSKYY YSMIANRLSD EEKEEIISLA  300
SIQPDNPAFF TVLQMSHVRR KNNFLIFPSR FVADHLESSL HEITLRRPNR KDKWCVKYYC  360
ARTSRGIRNY NFSKFMIDNK LREGDICAFE LMKGARRVTM TVHVIRNVDD RL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462946009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808342.11e-144B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT51e-108Y1209_ORYSJ; B3 domain-containing protein LOC_Os12g40090
TrEMBLA0A0A9VKQ71e-144A0A0A9VKQ7_ARUDO; Uncharacterized protein
STRINGSi022505m1e-138(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-27B3 family protein