PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462945471
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 157aa    MW: 16842.3 Da    PI: 8.0726
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462945471genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-104568427
               ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                +C ++a+ G+Ck+G++CkF H++
  462945471 45 QPCAYYAQHGFCKFGPTCKFDHPM 68
               59********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-54168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2674169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-74371IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-54566IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-84568IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDLQQPSGLV AIETILMIEL GYIKLLLLFA QNAQRRKLTE DLGSQPCAYY AQHGFCKFGP  60
TCKFDHPMGS LSYSPSASSL TDMPVAPYPL SFPVAHMAPS APSSDLRPQY AVTKEPSVNQ  120
QALPGTTYGH PGSITKVYAP HTLIRSPAST AAGMQAS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462945471
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815660.15e-52uncharacterized protein LOC112892755
SwissprotQ5NAV35e-47C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A0A9QL051e-54A0A0A9QL05_ARUDO; Uncharacterized protein
STRINGPavir.Eb00943.1.p8e-53(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2962334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.27e-15C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]