PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462945242 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB_related | ||||||||
Protein Properties | Length: 251aa MW: 26975.7 Da PI: 6.674 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.2 | 2.5e-10 | 46 | 78 | 22 | 48 |
T.......-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 22 g.......tWktIartmgkgRtlkqcksrwqkyl 48 + W++Iar+++ gRt++++k++w++yl 462945242 46 PhrqkrglKWSRIARHLP-GRTDNEVKNYWNSYL 78 155555567*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.055 | 24 | 82 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0074 | 28 | 80 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.12E-9 | 32 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.96E-8 | 47 | 78 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-13 | 49 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-7 | 52 | 78 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MNRLRTRLSL SNQVTPFFFS HRHGTGKEKE TWARNAKALF STNPKPHRQK RGLKWSRIAR 60 HLPGRTDNEV KNYWNSYLKK RVEGNKEAGP STPAPTTATN SSAESDDSQS VKAAGDGTAH 120 ELPSSDSGSS EPRESSSADS SCLTGPHRHP APHAPVAPKV MFADWLDMDY ISGQVAAAPG 180 LDAVGAGASP GDHHQVASQG SVQVDGPCGV DVFGDSGAGC WEFQEQFDGM DQMQTGGFCD 240 LLSMSEFFGL N |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462945242 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038744 | 2e-31 | BT038744.1 Zea mays full-length cDNA clone ZM_BFb0323B03 mRNA, complete cds. | |||
GenBank | HQ858714 | 2e-31 | HQ858714.1 Zea mays clone UT1170 MYB transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953256.1 | 3e-86 | transcription factor MYB4 | ||||
TrEMBL | A0A0A9F8A8 | 1e-100 | A0A0A9F8A8_ARUDO; Uncharacterized protein | ||||
STRING | Si017947m | 1e-85 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61420.1 | 1e-12 | myb domain protein 28 |