PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462945137 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 103aa MW: 12280.2 Da PI: 10.1577 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.5 | 6.2e-20 | 4 | 55 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq++ Le++F+ + ++ +++ +LA+ lgL+ rqV +WFqN+Ra++k 462945137 4 KRFSEEQIKSLESMFATQTKLEPRQKLQLARDLGLQPRQVAIWFQNKRARWK 55 57*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 125.3 | 2.7e-40 | 2 | 93 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+r+s+eq+k+LE++F +++kLep++K +lar+Lglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal + ++L+ke+++L ++l++ 462945137 2 NKKRFSEEQIKSLESMFATQTKLEPRQKLQLARDLGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYDTLKKEKHALLKQLEK 93 69*************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.8E-14 | 1 | 61 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 17.2 | 1 | 57 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.19E-12 | 3 | 58 | No hit | No description |
SuperFamily | SSF46689 | 8.13E-19 | 3 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.9E-17 | 3 | 55 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-20 | 4 | 64 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.5E-6 | 28 | 37 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 32 | 55 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.5E-6 | 37 | 53 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.8E-13 | 57 | 99 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MNKKRFSEEQ IKSLESMFAT QTKLEPRQKL QLARDLGLQP RQVAIWFQNK RARWKSKQLE 60 REYSALRDDY DALLCSYDTL KKEKHALLKQ LEKLAEMLQE PGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00650 | PBM | Transfer from LOC_Os09g35910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462945137 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087258 | 1e-115 | BT087258.1 Zea mays full-length cDNA clone ZM_BFb0020F23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957433.1 | 2e-62 | homeobox-leucine zipper protein HOX6 | ||||
Swissprot | Q651Z5 | 9e-61 | HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6 | ||||
Swissprot | Q9XH35 | 9e-61 | HOX6_ORYSI; Homeobox-leucine zipper protein HOX6 | ||||
TrEMBL | A0A0A9CR23 | 2e-61 | A0A0A9CR23_ARUDO; Uncharacterized protein | ||||
STRING | Si030983m | 6e-62 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7873 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-43 | homeobox 7 |
Publications ? help Back to Top | |||
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