PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462944922
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 330aa    MW: 34651.7 Da    PI: 8.4278
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462944922genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.3e-13174218347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ +++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qk+
        462944922 174 PWSEEEHRQFLVGLEKLGKGDWRGISRSYVTTRTPTQVASHAQKF 218
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.5325065IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.031167223IPR017930Myb domain
SuperFamilySSF466896.08E-17168224IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-17170222IPR006447Myb domain, plants
SMARTSM007171.0E-9171221IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-10171214IPR009057Homeodomain-like
PfamPF002492.2E-10174217IPR001005SANT/Myb domain
CDDcd001673.76E-9174219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
LLADQQPVAP PTGTAPVDTL ASTHLSQVAS PSAAKGTVQI PSIYSHSMAR KCSHCGNYGH  60
NSRTCSLGHR ETIMLCKAGN NGGGSSSGLR LFGVQVHVGA GSGAASSMMK KSYSMDCLQL  120
AAAAPGCSIV SPSSSSSSSM LLSIDEGLER AATNGYLSDG PHGRVVQERK KGVPWSEEEH  180
RQFLVGLEKL GKGDWRGISR SYVTTRTPTQ VASHAQKFFL RQSSMGKKKR RSSLFDMVPI  240
CENGARNSDQ LNSAEKASTS LSLNVPCEAS SDRPAFDLNC TEEDDNRSDF SSASGAGTGT  300
LRPSSHGHGH GLHCSLLELG MPLSTPSIGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226230KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462944922
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455906.11e-119transcription factor MYBS3
TrEMBLA0A0A9K2J01e-134A0A0A9K2J0_ARUDO; Uncharacterized protein
STRINGSb03g027120.11e-118(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-42MYB_related family protein