PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462944758
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 276aa    MW: 29443.3 Da    PI: 8.2564
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462944758genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-175198148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ ++k +G g+W++ ++  g+ R++k+c++rw +yl
        462944758 51 KGAWTKEEDQRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 98
                     79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-2442101IPR009057Homeodomain-like
PROSITE profilePS5129423.43346102IPR017930Myb domain
SMARTSM007174.1E-1450100IPR001005SANT/Myb domain
PfamPF002491.1E-155198IPR001005SANT/Myb domain
SuperFamilySSF466892.31E-2152124IPR009057Homeodomain-like
CDDcd001675.13E-125398No hitNo description
PROSITE profilePS500904.01999125IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.4E-8102125IPR009057Homeodomain-like
SMARTSM0071766103263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
PTLNAQALRQ LLLAARWCPP PPREETTQNA RTEEAVAMGR SPCCEKAHTN KGAWTKEEDQ  60
RLIAYIKAHG EGCWRSLPKA AGLLRCGKSC RLRWMNYLRP DLKRGNFTDD DDELIIKLHA  120
LLGNNCPAGP TTRGVDPQTH RPLGGGGGLT TSSTAGFPST APAPRLARPA STVPANVTFA  180
WPARSEDGHS SSGGSTDAPR CPDLNLDLDL SVGPPCSPPK TPAGDTASTP TSQHQRAPVC  240
LCYHLGVRVG EACGCKAASS PAAFQFLRPM DEGQYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-15501242699MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462944758
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9570801e-124JF957080.1 Agropyron cristatum transcription factor myb-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456719.11e-133myb-related protein 308
SwissprotP813931e-62MYB08_ANTMA; Myb-related protein 308
TrEMBLC5XRB41e-131C5XRB4_SORBI; Uncharacterized protein
STRINGSb03g041360.11e-132(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-60myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]