PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462944319 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB_related | ||||||||
Protein Properties | Length: 156aa MW: 17643.7 Da PI: 11.3164 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.6e-18 | 86 | 128 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar + gRt++ +k++w++ 462944319 86 PFTPEEDDTILRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 128 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.193 | 58 | 78 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-10 | 62 | 90 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.06E-25 | 62 | 138 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.779 | 79 | 133 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-15 | 83 | 131 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.96E-12 | 86 | 129 | No hit | No description |
Pfam | PF00249 | 2.5E-15 | 86 | 128 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-21 | 91 | 133 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MRWAVKVQSS PTNCNKPPNG FEEEHIPLRD KKSTHELHTR RRARGSFPHS NGRVSPGQLR 60 STPGRSGKSC RLRWCNQLSP QVEHRPFTPE EDDTILRAHA KFGNKWATIA RLLSGRTDNA 120 IKNHWNSTLK RNLARQGRNA DHDDVPAATA NLADVT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-24 | 64 | 133 | 36 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-24 | 64 | 133 | 36 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-24 | 64 | 133 | 36 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462944319 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679425 | 2e-95 | HF679425.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB19 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | O23160 | 3e-42 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A0K1SBH4 | 4e-43 | A0A0K1SBH4_REHGL; R2R3-MYB protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 1e-44 | myb domain protein 73 |
Publications ? help Back to Top | |||
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