PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462944111
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family FAR1
Protein Properties Length: 820aa    MW: 94269.2 Da    PI: 5.1448
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462944111genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.82e-2499185290
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 Y++Y++++GFsvrk k+++ + +++i +++++Cskeg +++e+ +  +++ +++etrt+Cka+++ + +++g+w+v+++  eHnHel+
  462944111  99 LYCDYGHRMGFSVRKGKQYYFTGTKTIRTKDYYCSKEGMKDDEQLT--EANFNKPETRTNCKAMVRFRVDSEGQWRVIQIIPEHNHELV 185
                7*****************************************9988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-2299185IPR004330FAR1 DNA binding domain
PfamPF105511.1E-29297391IPR018289MULE transposase domain
PROSITE profilePS509669.681579615IPR007527Zinc finger, SWIM-type
PfamPF044343.5E-6580611IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-5590617IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MEGTSIAIEI DGEAICLANV GDNEQEAQEN GEMPQIIYDA GGGEQVAFDT QEQGREERGG  60
GPEENDEEER GNNSLIPSRE LTEELRNKIA YSEEEAYRLY CDYGHRMGFS VRKGKQYYFT  120
GTKTIRTKDY YCSKEGMKDD EQLTEANFNK PETRTNCKAM VRFRVDSEGQ WRVIQIIPEH  180
NHELVRPEEI HLLRSVRTLS VPKPGVLNAM VNAEIQAMHE NLHVNEDGTE CNSQLSIRSY  240
TVLEPEDSEA LVGYFKRRTN EQGMFYWDVE VDQEGRLSNF FWRDGRSRLD YDSFGDVVIF  300
DTTYRTSKYN LICAPFIGVN HHWQNVMFGC AFLLDESPTS YKWLFKSFLE SMGGRCPKTI  360
FTDQNESISK AIEDVLPETR HCFCQWYIEK NFQSHLSTIN ASGTFHSMLS KCMKECESEA  420
ELDEAWAMMH HEYNMQEHQW LNDLYQQRHK WCTALHKDAF DGGIESLDRS ESSHNILSSI  480
GDESTSLATF VLEFDRLIGS WRENESLEDI QCNQTSLEST VKHSGILQHA AEVYTYKVYK  540
SLETDFLDGC SAMSYQEVQC GETMFRFEFI LQRSGSKVWV VFLDTSTMDL SCSCKKFETM  600
GILCSHALTA LGLKSVDRIP ESYILKRWTK YVRKATYPFR VDEFAEHNRT ESDFSYRNRA  660
MWFVYDLLMK SKSHHHARKL VLDVLENGEK TLESACELKR LHMNPSGKEK DGSRVEKRKK  720
KSAKLEKHSR NVKQVVLPQP ADSVFVDPPN QDQYYAAEDI ASNSSIGRPF FYQGYPATSI  780
SASQIQGHTN MQSVPQCASQ EYSAYGAVQP PSQFGDGRNF
Cis-element ? help Back to Top
SourceLink
PlantRegMap462944111
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808353.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2T7E5E60.0A0A2T7E5E6_9POAL; Uncharacterized protein
STRINGSi009370m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-84FAR1-related sequence 5