PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462943723

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NF-YC

Protein Properties

Length: 707aa MW: 80827.2 Da PI: 4.9754

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462943723	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	137.6	3.5e-43	94	195	2	100
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 l++fw++q i+++t+fk+h+lPl+rikki+kad dv++i+ eaPv+++kace+fi el+lr w ha+e krr ++k+di+ a++rt++fdflvdi p 462943723 94 LQAFWSSQlaeIKQTTEFKHHNLPLTRIKKIMKADSDVQRIAGEAPVVFAKACEMFIKELALRGWHHAQEDKRRRIRKNDISMALSRTEVFDFLVDISPP 193 89***998899**********************************************************************************998 PP NF-YC 99 de 100 d+ 462943723 194 DK 195 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.84E-26	79	187	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.7E-30	106	177	IPR009072	Histone-fold
Pfam	PF00808	5.4E-19	115	178	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF81383	1.7E-9	306	365	IPR001810	F-box domain
Gene3D	G3DSA:3.80.10.10	5.9E-29	307	576	IPR032675	Leucine-rich repeat domain, L domain-like
PROSITE profile	PS50181	8.782	310	357	IPR001810	F-box domain
Pfam	PF12937	5.0E-6	313	357	IPR001810	F-box domain
SuperFamily	SSF52047	1.1E-15	396	485	No hit	No description
SuperFamily	SSF52047	1.1E-15	513	577	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence Send to blast
MTLRHWVPSC AVSPYCRTGL LSDGYQIRNV QQIMVNEGAD EPPASEAPSA DSALPRITRD 60 APVCPYIQPQ LADEHQVAPK QAQQPHHDHQ KQELQAFWSS QLAEIKQTTE FKHHNLPLTR 120 IKKIMKADSD VQRIAGEAPV VFAKACEMFI KELALRGWHH AQEDKRRRIR KNDISMALSR 180 TEVFDFLVDI SPPDKLIGEF VGLPTTITEQ PIVPLWKTTK PLPQLPLIKD ELMGADIGLP 240 KSKSMQYTVT QRNASDPLPV IMDKVTPHLH LRKGEPDLEY MTSSPKKTQD CQVPLCTMDV 300 DPSPLEDSPE RDWSELPLDV LSSVFMKLGT IEILMGAGLV CRSWLMSAKS PELWRFVDMT 360 RHKLVFSKGE DTMCAMAKVA IDRSDGKMES FWAQKFVTDE LLDYIASRAN SLKSIRLIGC 420 TYIWTEALAR FASKCPLLEE IECSHHKMPA GLFRYIGKVC PQLKHLRIHM QWFDSDQIMR 480 EMAMESRQND EDEYEEPEES DEAWEARQNQ DAFAIAESLH ELRLLQMQGN SLTNKGVYAI 540 LEGCPHLEFL DISECYHIDV NAELRTRCAM LKHVWLPTRG NLRCPELHVI GVNEGEDDGL 600 TMHDLWLAEA ESLRAEAEMD NDGSYGDNYW ECDCSSPDEP WTHSRNMISD GPRFYSEFHD 660 YDDDCFILSQ YCDLYWLSFA VEMGSLLYLI RDFKSPAACK SHVLLVY

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence Send to blast

MTLRHWVPSC AVSPYCRTGL LSDGYQIRNV QQIMVNEGAD EPPASEAPSA DSALPRITRD  60
APVCPYIQPQ LADEHQVAPK QAQQPHHDHQ KQELQAFWSS QLAEIKQTTE FKHHNLPLTR  120
IKKIMKADSD VQRIAGEAPV VFAKACEMFI KELALRGWHH AQEDKRRRIR KNDISMALSR  180
TEVFDFLVDI SPPDKLIGEF VGLPTTITEQ PIVPLWKTTK PLPQLPLIKD ELMGADIGLP  240
KSKSMQYTVT QRNASDPLPV IMDKVTPHLH LRKGEPDLEY MTSSPKKTQD CQVPLCTMDV  300
DPSPLEDSPE RDWSELPLDV LSSVFMKLGT IEILMGAGLV CRSWLMSAKS PELWRFVDMT  360
RHKLVFSKGE DTMCAMAKVA IDRSDGKMES FWAQKFVTDE LLDYIASRAN SLKSIRLIGC  420
TYIWTEALAR FASKCPLLEE IECSHHKMPA GLFRYIGKVC PQLKHLRIHM QWFDSDQIMR  480
EMAMESRQND EDEYEEPEES DEAWEARQNQ DAFAIAESLH ELRLLQMQGN SLTNKGVYAI  540
LEGCPHLEFL DISECYHIDV NAELRTRCAM LKHVWLPTRG NLRCPELHVI GVNEGEDDGL  600
TMHDLWLAEA ESLRAEAEMD NDGSYGDNYW ECDCSSPDEP WTHSRNMISD GPRFYSEFHD  660
YDDDCFILSQ YCDLYWLSFA VEMGSLLYLI RDFKSPAACK SHVLLVY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-37	100	192	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	168	KRRRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462943723

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A2YS23	1e-155	A2YS23_ORYSI; Uncharacterized protein
STRING	ORGLA08G0046900.1	1e-155	(Oryza glaberrima)
STRING	OBART08G05440.1	1e-149	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP548	7	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	8e-44	nuclear factor Y, subunit C2