PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462943702
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YC
Protein Properties Length: 227aa    MW: 25420.2 Da    PI: 4.7503
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462943702genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC136.86.1e-4368164295
      NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                l++fw+ q   i+++t+fknh+lPlarikk +k d dv++is eaP++++kace+fi eltlr w ha+enkrrtl+k+di +a++rt++fdf+v  
  462943702  68 LQAFWSGQlaeIQHTTKFKNHNLPLARIKKTMKGDADVQRISGEAPMVFAKACEMFIQELTLRGWHHAQENKRRTLQKNDIIEAIARTEVFDFMVPS 164
                89****99888999*******************************************************************************9855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.8E-2851161IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.1E-3281152IPR009072Histone-fold
PfamPF008088.5E-1989152IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVNEGVTNGD ASADQPAASV APSAGASLPT VTQDAPVCPV IQPQLADEHQ VASKQAQQPH  60
HDHQKQELQA FWSGQLAEIQ HTTKFKNHNL PLARIKKTMK GDADVQRISG EAPMVFAKAC  120
EMFIQELTLR GWHHAQENKR RTLQKNDIIE AIARTEVFDF MVPSDEKKGT SVPPNTTAVQ  180
EDDDDPYANY YECDCFSCPS SPDEPDLRNV TCDDPRYYTY IHEYYSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-4175162390NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145RRTLQKN
Cis-element ? help Back to Top
SourceLink
PlantRegMap462943702
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321034.13e-70nuclear transcription factor Y subunit C-3
TrEMBLA0A3L6PNJ37e-99A0A3L6PNJ3_PANMI; Uncharacterized protein
STRINGPavir.Fa02054.1.p3e-98(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1972668
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-48nuclear factor Y, subunit C2