PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462943699 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | WRKY | ||||||||
Protein Properties | Length: 195aa MW: 21574 Da PI: 6.7157 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.4 | 1.1e-31 | 85 | 141 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++ ++++ ei+Y+geHnh+k 462943699 85 DGYNWRKYGQKKVKGSEFPRSYYKCTHPSCPVKRKVETTI-EGQIAEIVYSGEHNHPK 141 9***************************************.***************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.928 | 78 | 142 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.4E-27 | 79 | 142 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.02E-25 | 80 | 142 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-32 | 83 | 141 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-24 | 85 | 140 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MQDHEKTAAL KPVASRPFST SRSFSKRLQD FSATDSRPVT ILEETSNMLE EMEVDTEQVV 60 SCDPLTTCDA VRKPMGGVKN NLSYDGYNWR KYGQKKVKGS EFPRSYYKCT HPSCPVKRKV 120 ETTIEGQIAE IVYSGEHNHP KPHPPRKPSS STSTEVAVAD LHDTSNVEAE IQTGGHNQVP 180 DITVTASGEH VQVVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-16 | 85 | 142 | 16 | 74 | WRKY transcription factor 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462943699 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242855 | 2e-70 | AK242855.1 Oryza sativa Japonica Group cDNA, clone: J090073J20, full insert sequence. | |||
GenBank | AP014968 | 2e-70 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY341860 | 2e-70 | AY341860.1 Oryza sativa (japonica cultivar-group) WRKY20 mRNA, complete cds. | |||
GenBank | BX000496 | 2e-70 | BX000496.1 Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | BX000503 | 2e-70 | BX000503.2 Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | CP012620 | 2e-70 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819931.1 | 2e-74 | probable WRKY transcription factor 3 | ||||
Refseq | XP_025819932.1 | 2e-74 | probable WRKY transcription factor 3 | ||||
TrEMBL | A0A0A9G2V5 | 2e-81 | A0A0A9G2V5_ARUDO; WRKY3 | ||||
TrEMBL | A0A0A9PMD8 | 3e-81 | A0A0A9PMD8_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Fa00406.1.p | 4e-69 | (Panicum virgatum) | ||||
STRING | Si014939m | 2e-69 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2325 | 29 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.2 | 2e-29 | WRKY family protein |