PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462943512 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 25340.5 Da PI: 8.4852 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.8 | 1.3e-15 | 26 | 77 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ +s++ + a+i+ A++Y+++L+ 462943512 26 QRMNHIAVERNRRRQMNDYLAVLRSLMPPS---YSQRGDQASIVGGAINYVRELE 77 79****************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-14 | 24 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.42E-14 | 24 | 81 | No hit | No description |
PROSITE profile | PS50888 | 16.418 | 25 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.98E-18 | 25 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-13 | 26 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-11 | 31 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MQQTTTTRRK RRRTKIVKNE EEIESQRMNH IAVERNRRRQ MNDYLAVLRS LMPPSYSQRG 60 DQASIVGGAI NYVRELEHIL QSLEVQKSLK DRGCNAEDGG QSPFAGFFSF PQYSTCSASH 120 GSNGHRVQAE STATADIEAS MVEGHASLKV QVQRRSSQLL RLTAGLQQLG LTTLHLNVST 180 AGATGMYSFS LKLEDECKLT SVEEIAEAVH EILGKIQAEQ AFVDTRTG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 12 | RKRRR |
2 | 8 | 13 | RKRRRT |
3 | 26 | 37 | RMNHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462943512 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983211.1 | 1e-110 | transcription factor bHLH96 | ||||
Swissprot | Q9C7T4 | 1e-69 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A0A9JFW2 | 1e-109 | A0A0A9JFW2_ARUDO; Uncharacterized protein | ||||
TrEMBL | K4AIE1 | 1e-109 | K4AIE1_SETIT; Uncharacterized protein | ||||
STRING | Si038653m | 1e-110 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 3e-60 | bHLH family protein |
Publications ? help Back to Top | |||
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