PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462943316

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NAC

Protein Properties

Length: 412aa MW: 46189.6 Da PI: 7.8165

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462943316	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.9	5.9e-51	63	203	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.............kvka.eekewyfFskrdkkyatgkrknratksgyWkat 86 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL++ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkat 462943316 63 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREIDLNKLEPWDLKEpihrksrgladrcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKAT 161 69**************************.9***********86678888888887644443566************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk+++ + + +gl+ktLvfy grap+g+ktdW+mheyrl 462943316 162 GRDKAIFLGSARRIGLRKTLVFYVGRAPHGKKTDWIMHEYRL 203 ****99999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-56	54	223	IPR003441	NAC domain
PROSITE profile	PS51005	56.254	63	223	IPR003441	NAC domain
Pfam	PF02365	2.7E-27	64	203	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MSFGNWKANV EFHFMHERKE ASIAVHAPVG NGRGIEALGF GKMEWRSFVW QGRMHPSGGP 60 LSVPPGFRFH PTDEELLYYY LRKKVAYEPI DLDVIREIDL NKLEPWDLKE PIHRKSRGLA 120 DRCRIGTGPQ NEWYFFSHKD KKYPTGTRTN RATTAGFWKA TGRDKAIFLG SARRIGLRKT 180 LVFYVGRAPH GKKTDWIMHE YRLDEESVEI QEDGWVVCRV FKKKNYQRGL NPADMAMLED 240 EELPQLPTPV PGAMPTEHKL NPHLMHYDFP SFDPSMQLPQ LMNADQPVPA FLSSQPGVAM 300 GMSSLDAECS QNLMKMTSSG GGEGMLHGGG GSGGAGVDHF ASTTDWSILD KLLASHQNLD 360 QLFQGKVTAA SAAPMAPPYH QQLMELGSTS SLQRFPLQYL GGEAADLLRF PK

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MSFGNWKANV EFHFMHERKE ASIAVHAPVG NGRGIEALGF GKMEWRSFVW QGRMHPSGGP  60
LSVPPGFRFH PTDEELLYYY LRKKVAYEPI DLDVIREIDL NKLEPWDLKE PIHRKSRGLA  120
DRCRIGTGPQ NEWYFFSHKD KKYPTGTRTN RATTAGFWKA TGRDKAIFLG SARRIGLRKT  180
LVFYVGRAPH GKKTDWIMHE YRLDEESVEI QEDGWVVCRV FKKKNYQRGL NPADMAMLED  240
EELPQLPTPV PGAMPTEHKL NPHLMHYDFP SFDPSMQLPQ LMNADQPVPA FLSSQPGVAM  300
GMSSLDAECS QNLMKMTSSG GGEGMLHGGG GSGGAGVDHF ASTTDWSILD KLLASHQNLD  360
QLFQGKVTAA SAAPMAPPYH QQLMELGSTS SLQRFPLQYL GGEAADLLRF PK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-46	61	225	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-46	61	225	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-46	61	225	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-46	61	225	15	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-46	61	225	18	170	NAC domain-containing protein 19
3swm_B	1e-46	61	225	18	170	NAC domain-containing protein 19
3swm_C	1e-46	61	225	18	170	NAC domain-containing protein 19
3swm_D	1e-46	61	225	18	170	NAC domain-containing protein 19
3swp_A	1e-46	61	225	18	170	NAC domain-containing protein 19
3swp_B	1e-46	61	225	18	170	NAC domain-containing protein 19
3swp_C	1e-46	61	225	18	170	NAC domain-containing protein 19
3swp_D	1e-46	61	225	18	170	NAC domain-containing protein 19
4dul_A	1e-46	61	225	15	167	NAC domain-containing protein 19
4dul_B	1e-46	61	225	15	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462943316

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT038816	7e-97	BT038816.1 Zea mays full-length cDNA clone ZM_BFb0329L19 mRNA, complete cds.
GenBank	EU977078	7e-97	EU977078.1 Zea mays clone 998381 NAC domain-containing protein 76 mRNA, complete cds.
GenBank	JX428482	7e-97	JX428482.1 Zea mays subsp. mays clone pUT3079 NAC116 NAC type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965525.1	0.0	NAC domain-containing protein 76
Swissprot	Q5Z6B6	1e-117	NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBL	K3Y0W1	0.0	K3Y0W1_SETIT; Uncharacterized protein
STRING	Si007822m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3461	37	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	2e-94	NAC family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]