PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462943268 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 215aa MW: 23359.5 Da PI: 8.6782 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.7e-18 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde+l +v+q+G g +W + +++ g++R++k+c++rw++yl 462943268 14 RGPWSPEEDERLRSYVQQHGIGgNWISLPQKAGLNRCGKSCRLRWLNYL 62 89******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 38 | 3.9e-12 | 71 | 111 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 T++Ed ++ + + G++ W+ Ia++++ gRt++++k++w++ 462943268 71 YTEQEDRIICSLYNSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111 69*****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.058 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.42E-28 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-25 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.71E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 14.57 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-22 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.01E-9 | 71 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
MGRAPCCDKA TVKRGPWSPE EDERLRSYVQ QHGIGGNWIS LPQKAGLNRC GKSCRLRWLN 60 YLRPDIKHGG YTEQEDRIIC SLYNSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKAMAA 120 ATSPALSPAS SSVTSSPSCD GRFATGFPQP QGLIRFDAPA TPPCRSRTEL APVPPPAVAL 180 DGVWAPSAPA SDAVAPLDDD VFLHELVGGD QLLLF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-27 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462943268 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HF679430 | 1e-162 | HF679430.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB24 protein. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637875.1 | 2e-89 | transcription factor RAX2 | ||||
Swissprot | Q9FKL2 | 1e-68 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | A0A3L6T1M0 | 4e-92 | A0A3L6T1M0_PANMI; Transcription factor RAX2-like | ||||
STRING | Pavir.J11789.1.p | 7e-89 | (Panicum virgatum) | ||||
STRING | ORUFI05G26880.1 | 8e-89 | (Oryza rufipogon) | ||||
STRING | OS05T0553400-01 | 8e-89 | (Oryza sativa) | ||||
STRING | ORGLA05G0216200.1 | 9e-89 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49690.1 | 5e-66 | myb domain protein 84 |
Publications ? help Back to Top | |||
---|---|---|---|
|