PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462943043
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 396aa    MW: 44203 Da    PI: 6.7929
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462943043genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.4e-111571155
        AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
               s y+GV+ ++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  462943043 15 SVYRGVTKHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 71
               78*******************4444.2455535555.779999**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.50E-171581No hitNo description
PfamPF008471.0E-81571IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-141580IPR016177DNA-binding domain
SMARTSM003804.3E-211685IPR001471AP2/ERF domain
PROSITE profilePS5103217.1081679IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-121680IPR001471AP2/ERF domain
PRINTSPR003671.4E-61728IPR001471AP2/ERF domain
SMARTSM003808.8E-4114162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-5132157IPR001471AP2/ERF domain
PRINTSPR003671.4E-6138158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MQKKAPAETF GQRTSVYRGV TKHRWTGRYE AHLWDNSCRR EGQTRKGRQG GYDKEEKAAR  60
AYDLAALKYW GNTTTTNFPV TEYEKELEEM KDMTRQEYVA SLRRHVSLQL CTMVEKKQWI  120
LSWSINVPRS YQEEAAEAYD IAAIKFRGLN AVTNFDMSRY DVKSIIESTV PIGSGATKRT  180
KDVPEHADMG LYSNGNVTGH LAASNLLTDG IGSYGSQHDG YGDWAPFNYL PAPLQQSNGH  240
GRSRVWCKQE EHEGVAAARN LHNLQYFTNV SGTHNFFQPS ALQNETGFMP SQSLDSNSAM  300
YNGGVSYHGD VGRGCYAMPV ARLASCYEDD GGTVPDLYNG QKMYYLSQDS PLGDSSKDNT  360
YGQGVEYENW VSTAPLTAQK ATDAMASHGL PLFSLK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462943043
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979180.11e-154AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A1E5UT551e-161A0A1E5UT55_9POAL; AP2-like ethylene-responsive transcription factor BBM2
STRINGPavir.Hb01059.1.p1e-148(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.12e-77AP2 family protein