PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462942741
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CPP
Protein Properties Length: 456aa    MW: 49859.1 Da    PI: 7.6947
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462942741genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.41.7e-1477115241
        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                +kk+CnCk+s+Clk+YCeCfaag++C+  C+C++C N+ e
  462942741  77 RKKHCNCKNSHCLKLYCECFAAGVYCDG-CNCKHCGNTLE 115
                689*************************.********976 PP
2TCR49.39.6e-16161200140
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                k++kgC+Ckks ClkkYCeCf+a+  Cs++C+C dCkN e
  462942741 161 KHNKGCHCKKSFCLKKYCECFQANILCSKNCRCMDCKNFE 200
                589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.8E-1576116IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.18477201IPR005172CRC domain
PfamPF036382.5E-1178113IPR005172CRC domain
SMARTSM011141.1E-17161202IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.8E-12164199IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MEQEKQQGME PPAPAPPTAA AIEPGAPPXP PPPPPQQQQP KPAISVQPVM PVTRPWPVAF  60
TPMKPVVEMK NGTPMKRKKH CNCKNSHCLK LYCECFAAGV YCDGCNCKHC GNTLENEKIR  120
QAAINNTKQR NPNAFQPKIE NISNNVSVRK DDAGAAPSLP KHNKGCHCKK SFCLKKYCEC  180
FQANILCSKN CRCMDCKNFE GSEELQAARQ GDISCDRNNV QQAANVALNG AIGSSGYRFS  240
PVRKKRPPEG PSAQRINGEE SMIQARFQEA NYADGSHDAT STGRGCIGNK MEKEMDREIC  300
TNDIANFGAN KEEVHKAASG LGNVTTADQQ NTGEFGSQFS NSQEDCRPAS PGTQALMCDE  360
QDLTFGTDYR SPIPPALPDE DISELHAAQE NAVLRVVGNC LRRIITRGQM TEEEAPGKEL  420
AGEAAVLALH AYEVLKNKMG DGRDKYRRQL CGIQTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-247820411126Protein lin-54 homolog
5fd3_B7e-247820411126Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462942741
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810513.10.0protein tesmin/TSO1-like CXC 5 isoform X2
TrEMBLA0A0A9D9J60.0A0A0A9D9J6_ARUDO; Uncharacterized protein
STRINGPavir.Da01744.1.p1e-179(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-72Tesmin/TSO1-like CXC domain-containing protein