PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462942583
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 1190aa    MW: 134742 Da    PI: 5.1338
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462942583genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-101962248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
        462942583 19 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 62
                     68*****************99.********8..**********9986 PP
2Myb_DNA-binding31.73.5e-10282324348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
        462942583 282 EWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 324
                      6*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-6223IPR009057Homeodomain-like
SuperFamilySSF466892.69E-18267IPR009057Homeodomain-like
PROSITE profilePS5129421.0531366IPR017930Myb domain
CDDcd116594.31E-301465No hitNo description
SMARTSM007171.7E-121764IPR001005SANT/Myb domain
PfamPF139214.0E-92169No hitNo description
Gene3DG3DSA:1.10.10.601.7E-112463IPR009057Homeodomain-like
PROSITE profilePS5129415.227277328IPR017930Myb domain
SMARTSM007178.0E-11279326IPR001005SANT/Myb domain
CDDcd116591.30E-26281327No hitNo description
Gene3DG3DSA:1.10.10.602.5E-10282325IPR009057Homeodomain-like
SuperFamilySSF466896.96E-11282329IPR009057Homeodomain-like
PfamPF139214.1E-9283331No hitNo description
PfamPF118314.7E-59627877IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1190 aa     Download sequence    Send to blast
AKQCKARWYE WLDPSIKKTE WTREEDEKLL HLAKLMPTQW RTIAPIVGRT PSQCLERYEK  60
LLDAACAKDE NYEPNDDPRK LRPGEIDPNP ESKPARPDPV DMDEDEKEML SEARARLANT  120
RGKKAKRKAR EKQLEEARRL ASLQKRRELK AAGIDTRKRN RKRKGIDYNA EIPFEKRPPS  180
GFYDTVGEDK PPEHLQFPTT IEELEGKRRV DIEAQLRKQD IARNKILQRQ DAPAAIMQAN  240
KLNDPEAVTK RSKLMLPPPQ ISDHELEEIA KMGSAGDPGL TEWTREEDEK LLHLAKLMPT  300
QWRTIAPIVG RTPSQCLERY EKLLDAACAK DENYEPNDDP RKLRPGEIDP NPESKPARPD  360
PVDMDEDEKE MLSEARARLA NTRGKKAKRK AREKQLEEAR RLASLQKRRE LKAAGIDTRK  420
RNRKRKGIDY NAEIPFEKRP PSGFYDTVGE DKPPEHLQFP TTIEELEGKR RVDIEAQLRK  480
QDIARNKILQ RQDAPAAIMQ ANKLNDPEAV TKRSKLMLPP PQISDHELEE IAKMGSAGDP  540
GLVEELGEGS TATRTLLSSY SQTPRLGMTP LRTPQRTPAG KGDAIMMEAE NLARLRESQT  600
PLLGGDNPDL HPSDFSGVTP RKKEIQTPNP MATPLASPGP GATPRIGMTP SRDGNSFGLT  660
PKATPFRDEL RINEEVDMQE SAKLELHRQA ELRKSLRSGF ASIPQPKNEY QIVMPPITED  720
EKEETEEKIE EDMSDRLARE RAEEQARQEA LLRKRSKVLQ RSLPRPPAAS VEVLRQSLIK  780
AGESRNRSTF VPPTSLEQAD DLINEELLRL LEHDNAKYPL DEKSQKEKKK GNKRQANGAA  840
FVPEIEDFDE VELKEASSMV EEEIQYLRVA MGHENEPFED FVKAHDACQE DLMYFPTNNG  900
YGLASVAGNV DKITAFQNEF EIVKRRMDDE AKKASRLEQK IKLLTQGYQV RAGKLWSQIQ  960
DTFKQMDTAA TELECFQELQ KQEQMAASYR VRNLTEEVNK QKALERTLQS RYGDLLSSYQ  1020
RMQEQLEERR NQLKIQEAVE AENRAREEVA AQNHAAGEEN ERNCNVEEEK DQMNSVAHEE  1080
PAGSKRINKD QMDADNSNAD GEFVGPIPPA PEHAQENNGE ASVQENSSMT QGADYGAGNG  1140
EACGSMSLDA GNQEDEKNKL PTVGASISEG NTALSSDQTV ISEENDMVSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-1791101643792Cell division cycle 5-like protein
5xjc_L1e-1791101643792Cell division cycle 5-like protein
5yzg_L1e-1791101643792Cell division cycle 5-like protein
5z56_L1e-1791101643792Cell division cycle 5-like protein
5z57_L1e-1791101643792Cell division cycle 5-like protein
5z58_L1e-1791101643792Cell division cycle 5-like protein
6ff4_L1e-1791101643792Cell division cycle 5-like protein
6ff7_L1e-1791101643792Cell division cycle 5-like protein
6icz_L1e-1791101643792Cell division cycle 5-like protein
6id0_L1e-1791101643792Cell division cycle 5-like protein
6id1_L1e-1791101643792Cell division cycle 5-like protein
6qdv_O1e-1791101643792Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406425KRRELKAAGIDTRKRNRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462942583
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975336.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A1E5UVC00.0A0A1E5UVC0_9POAL; Cell division cycle 5-like protein
STRINGSi009268m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44163553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]